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motu-tool / mOTUs

motus - a tool for marker gene-based OTU (mOTU) profiling
GNU General Public License v3.0
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Can not download db_mOTU_v2.5.1.tar.gz #46

Closed PandengWang closed 4 years ago

PandengWang commented 4 years ago

Hi, @AlessioMilanese Thanks for this useful tool! I can not download the database from https://zenodo.org/record/3366460/files/db_mOTU_v2.5.1.tar.gz, when I tried to install motus.

Could you provide another web link, such as figshare, to download this database?

Thanks. Pandeng

AlessioMilanese commented 4 years ago

Hi Pandeng, Thanks for using the tool and reporting the issue.

I can not download the database from https://zenodo.org/record/3366460/files/db_mOTU_v2.5.1.tar.gz, when I tried to install motus.

Can you copy here the error that you got when running python setup.py?

Could you provide another web link, such as figshare, to download this database?

I would prefer to solve the issue with Zenodo. First, because it's embedded in the setup.py script and second, because if we put it on figshare, then we have to keep also that update.

PandengWang commented 4 years ago

Thanks so much for your quickly reply. It didn't throw an error, but after downloading a few kb, the download speed began to drop to 0 kb/s. I tried to download this database using "Internet Download Manager" software and it also didn't work. I'm in China. I'm doubting whether the download request will be automatically blocked by this website. So, I would appreciate very much if you could provide me this database by other means.

Thanks. Pandeng

AlessioMilanese commented 4 years ago

I added it to a ftp server. Can you please change setup.py at line 15, from:

link_db = "https://zenodo.org/record/3366460/files/db_mOTU_v2.5.1.tar.gz"

to:

link_db = "https://www.embl.de/download/zeller/milanese/mOTUs2.5.1/db_mOTU_v2.5.1_test.tar.gz"
PandengWang commented 4 years ago

I added it to a ftp server. Can you please change setup.py at line 15, from:

link_db = "https://zenodo.org/record/3366460/files/db_mOTU_v2.5.1.tar.gz"

to:

link_db = "https://www.embl.de/download/zeller/milanese/mOTUs2.5.1/db_mOTU_v2.5.1_test.tar.gz"

Problem is resolved. Thanks so much!