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motu-tool / mOTUs

motus - a tool for marker gene-based OTU (mOTU) profiling
GNU General Public License v3.0
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Conda motus-3.0.1 #78

Closed plmeta closed 2 years ago

plmeta commented 3 years ago

Hello,

I wonder if conda install is working now for version 3.0.1. I saw the package is already on conda. But it still installs version 1.0 when using it.

Thanks!

All the best, pl

AlessioMilanese commented 3 years ago

Hello,

That's weird. Can you try to run:

 conda install -c bioconda/label/cf201901 motus
plmeta commented 3 years ago

Hi, thanks for the quick reply. I think I found the issue. I am installing with a .yml file and there are some dependencies that forced motus to install a lower version.

AlessioMilanese commented 3 years ago

I see. i guess samtools or bwa, or maybe something related to metaSNV. Is it working now?

plmeta commented 3 years ago

I haven't unfortunately. I managed to install 3.0.1 once but now I couldn't manage again. It is now version 2.0.1 with dependencies like blow. I tried also both py3.7 and py3.8. Screenshot 2021-08-10 at 15 36 03

AlessioMilanese commented 3 years ago

maybe create a new conda environment can help? https://github.com/motu-tool/mOTUs/wiki/Installation#install-dependencies-with-conda

plmeta commented 3 years ago

Hi, finnally I made it to work.

python 3.8.1 + samtools 1.9 + bwa 0.1.17, then I am getting motus 3.0.1 by: conda install -c bioconda motus=3.0.1

AlessioMilanese commented 3 years ago

Nice!

I know it can be messy with the different tool versions, and it's not completely under our control. Thanks for cheking. I can point to this discussion if anyone gets the same problem!