Closed TianyiChang closed 1 year ago
This meta-mOTUs have no genome or MAG, hence it was not possible to run GTDB-Tk.
I will fix the taxonomy next week (but basically for these there is no GTDB annotation).
Thank you so much for your quick reply! It seems a bit strange since some of the query reads were assigned to these meta-mOTUs (there are 84 mOTUs in total in my case), which have no GTDB taxonomy information.
I look forward to hearing back from you.
Thanks again.
On Sep 23 2022, at 5:52 PM, Alessio Milanese @.***> wrote:
This meta-mOTUs have no genome or MAG, hence it was not possible to run GTDB-Tk.
I will fix the taxonomy next week (but basically for these there is no GTDB annotation).
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The file it's updated now. We also added the GTDB annotation for each genome: https://zenodo.org/record/7146984#.Y0XdplJBwbk
Thanks a lot!!
On Oct 11 2022, at 5:19 PM, Alessio Milanese @.***> wrote:
The file it's updated now. We also added the GTDB annotation for each genome: https://zenodo.org/record/7146984#.Y0XdplJBwbk
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Hi there
Thanks for providing a GTDB annotation file. It seems that many motus were missing from 'mOTUs_3.0.0_GTDB_tax.tsv', such as the below:
meta_mOTU_v3_13058 meta_mOTU_v3_13316 meta_mOTU_v3_13553 meta_mOTU_v3_13666 meta_mOTU_v3_13677 meta_mOTU_v3_13799 meta_mOTU_v3_14519
I was wondering if there are quality issues associated with these missing motus?
Thanks!