modify extension of output files

[cjprybol]

running Lighter with paired end read files ending in the extension .R1.fastq.gz and .R2.fastq.gz yields output files with the extensions .R1.fastq.cor.fq.gz and .R2.fastq.cor.fq.gz.

could you drop the redundant .fastq extension when naming the output file?

my running command is lighter -r "$f" -r "$reverse" -K 19 41020000 -od "$OUT_DIR" -trim -stable -t 8 2>> "$OUT_DIR/lighter.out"

[mourisl]

Good point. The redundant "fastq" does not look well on the output file. I've removed that and uploaded a new version. Thanks.

[cjprybol]

Just tried out updated version and the output looks great, thanks for revising the code so quickly!