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mourisl / Rascaf

Scaffolding with RNA-seq read alignment
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rascaf-join failure #23

Open sagnikbanerjee15 opened 2 years ago

sagnikbanerjee15 commented 2 years ago

I have executed rascaf with a position-sorted bamfile, and it has generated a .out output. I fed that output file to rascaf-join and it ended in a segmentation fault. The only output from rascaf-join was "open: No such file or directory"

Thanks

sagnikbanerjee15 commented 1 year ago

Did anyone encounter a similar issue?

mourisl commented 1 year ago

Sorry I missed the previous message. Is any of the .out file empty?

sagnikbanerjee15 commented 1 year ago

Hi @mourisl,

The .out file was not empty. I can email it to you if you want a closer look. I am assembling a fungal genome

Thanks

mourisl commented 1 year ago

I can take a look at the data. Thank you!

sagnikbanerjee15 commented 1 year ago

Could you please tell me the email id where I can email it? Thanks.

mourisl commented 1 year ago

My email is Li.Song@dartmouth.edu . Thank you!