cannot make

[macmanes]

Li,

I am getting an error that prohibits me from installing the software on Ubuntu Linux 14.04.2 kernel 3.13.0-46-generic

git clone https://github.com/mourisl/Rcorrector.git
sh build.sh

...
g++ -Wall -lpthread -g -I . -std=c++0x   -c -o main.o main.cpp
main.cpp: In function ‘int main(int, char**)’:
main.cpp:289:10: warning: unused variable ‘readId’ [-Wunused-variable]
    char *readId = reads.id ;
          ^
main.cpp:297:10: warning: variable ‘readId2’ set but not used [-Wunused-but-set-variable]
    char *readId2, *seq2, *qual2 ;
          ^
main.cpp:82:9: warning: unused variable ‘j’ [-Wunused-variable]
  int i, j, k ;
         ^
g++ -Wall -lpthread -g -I . -std=c++0x   -c -o KmerCode.o KmerCode.cpp
g++ -Wall -lpthread -g -I . -std=c++0x   -c -o ErrorCorrection.o ErrorCorrection.cpp
ErrorCorrection.cpp: In function ‘void* ErrorCorrection_Thread(void*)’:
ErrorCorrection.cpp:71:6: warning: unused variable ‘i’ [-Wunused-variable]
  int i, ind ;
      ^
ErrorCorrection.cpp: In function ‘void SearchPaths_Right(int, int, int, int, bool, char*, int, int*, int, int&, int*, int&, int&, int*, bool*, bool*, KmerCode&, Store&, int&)’:
ErrorCorrection.cpp:328:7: warning: unused variable ‘j’ [-Wunused-variable]
   int j, k ;
       ^
g++ -o rcorrector -Wall -lpthread -g -I . -std=c++0x KmerCode.o ErrorCorrection.o main.o
main.o: In function `main':
/share/Rcorrector/main.cpp:375: undefined reference to `pthread_create'
/share/Rcorrector/main.cpp:378: undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make: *** [all] Error 1

[mourisl]

I just updated the Makefile. Could you please update it and try again? Thanks.

[macmanes]

Looks good, thanks!