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mourisl / Rcorrector

Error correction for Illumina RNA-seq reads
GNU General Public License v3.0
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'Bad quality threshold is !' #10

Open moskalenko opened 6 years ago

moskalenko commented 6 years ago

When the example is run there is a warning 'Bad quality threshold is !'. Looking at the code it comes from

main.cpp:365: fprintf( stderr, "Bad quality threshold is %c\n", badQualityThreshold ) ;

so it looks like badQualityThreshold is not calculated in GetBadQuality even for sample data.

mourisl commented 6 years ago

Thanks for this suggestion. Using integer though resolves this issue, but the acsii code for the quality score is not straightforward. So I add a single-quotation signs around the quality score. Hope this would make the message clearer.