Open macmanes opened 8 years ago
Li:
Enhancement: Accept interleaved reads with -i or --interleaved.
-i
--interleaved
I'd like to do this:
seqtk mergepe $HOME/reads/kidney.1.fq.gz $HOME/reads/kidney.2.fq.gz \ | skewer -l 25 -m pe --mean-quality $trim --end-quality $trim -t 8 -x $HOME/TruSeq3-PE.fa - -1 \ | perl $HOME/Rcorrector/run_rcorrector.pl -t 8 -k 25 --interleaved -
You can use "-i" to specify interleaved reads now.
Since Rcorrector scans the input several times, it is difficult to put it into pipeline in that fashion.
Li:
Enhancement: Accept interleaved reads with
-i
or--interleaved
.I'd like to do this: