If run on more than one thread, rcorrector hangs after doing its job (and sometimes before)

mourisl / Rcorrector

Error correction for Illumina RNA-seq reads

GNU General Public License v3.0

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If run on more than one thread, rcorrector hangs after doing its job (and sometimes before) #28

Open margoleb opened 3 years ago

margoleb commented 3 years ago

Hello,

I've got a problem with rcorrector not finishing its threads properly and not exiting after performing correction. It seems to be related to the pthreads library, as the problems started after major system upgrade when glibc version changed (2.12 -> 2.14). I recompiled the program and it started working, but instead of exiting gracefully it simply hangs, as stated before.

Best regards, Marcin

mourisl commented 3 years ago

Thank you for bringing this to our attention. Just want to make sure, which version of Rcorrector did you use?