Closed StevenWingett closed 2 years ago
Thanks for finding this error! The trim feature is removed because it may remove valuable information for lowly expressed transcripts. I have updated the README flie.
Rcorrector can take fastqs with varied read length, so you can directly use quality-trimmed FASTQ file as input.
Great, thanks for letting me know.
Steven
Hi,
Firstly, thank you for making this great tool available to the bioinformatics community. I have a question about the -trim option. It is mentioned in the README.md file:
-trim : allow trimming (default: false)
But this option is not present in the run_rcorrector.pl help message, nor is this option allowed by the this script.
I presume that the run_rcorrector.pl script has changed but the README.md has not been updated accordingly. I was just wondering, does this mean that the tool will accept quality-trimmed FASTQ files by default?
Many thanks for your assistance.
Regards, Steven