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mourisl / Rcorrector

Error correction for Illumina RNA-seq reads
GNU General Public License v3.0
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Feature Request: Argument for controlling where temporary files are written #40

Closed gladshire closed 8 months ago

gladshire commented 8 months ago

If I am mistaken, and this is currently already possible, I apologize.

I would like to integrate Rcorrector into a transcriptome assembly pipeline, and I think allowing specification of where Rcorrector should place the temporary files generated during its runtime (.bc / .mer_counts / .jf_dump), rather than placing them in the current working directory, would be a nice quality of life feature to add.

mourisl commented 8 months ago

I just added the option "-tmpd" that can specify the directory for storing temporary files (need to manually create the folder first). Please let me whether it works on your data. Thank you!

gladshire commented 8 months ago

Works great! Would this be something you'd be willing to publish a new set of pre-compiled binaries for? Totally understand if not.

mourisl commented 8 months ago

I have released a new version 1.0.7. The bioconda will automatically update rcorrector soon and will generate the pre-compiled binaries at: https://anaconda.org/bioconda/rcorrector/files

gladshire commented 8 months ago

Much appreciated, along with your promptness with everything.