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mozack / abra

Assembly Based ReAligner
MIT License
71 stars 12 forks source link

Replace System.out.println's with System.err.println's for streaming #30

Closed dnbaker closed 8 years ago

dnbaker commented 8 years ago

Also made \t and spaces consistent.

I haven't built it, as I haven't gotten Maven set up properly, but I imagine it should work, as it was a simple set of changes to make.

mozack commented 8 years ago

Thanks for submitting this. There are a few issues. There are sub-programs within the jar that are required to write to stdout. We cannot replace all cases. Also, there is some C code that needs to be modified to log to stderr. I'm also not prepared to take the whitespace changes at the moment. Will put together changes for this shortly.