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mozack / abra

Assembly Based ReAligner
MIT License
70 stars 12 forks source link

Change header in bam #37

Open FedikZe opened 6 years ago

FedikZe commented 6 years ago

Dear all, I have problems with header after realignment of abra tool. Do you have same problem? FixMateInformation doesn't work. Thank you Filip

mozack commented 6 years ago

No, we've not encountered header problems with ABRA.

If you suspect ABRA is causing an issue with the header, please provide the headers of the input BAM file, the output BAM file and examples of downstream errors you are seeing.

Also, please make sure to sort and index the output BAM file prior to downstream processing.