Abra processes unique reads?

mozack / abra

Assembly Based ReAligner

MIT License

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Abra processes unique reads? #41

Closed ionox0 closed 6 years ago

ionox0 commented 6 years ago

I just had a question regarding Abra 0.92, does it realign all reads or only reads that have not had their duplicate flag set by Picard MarkDuplicates?

Thank you

mozack commented 6 years ago

Please see: https://github.com/mozack/abra/issues/39

Let me know if you are seeing behavior that indicates otherwise.

ionox0 commented 6 years ago

Sorry for the duplicate question

And thanks for the help!