Is it possible to get the assembled contig?

mozack / abra

Assembly Based ReAligner

MIT License

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Open juberpatel opened 6 years ago

juberpatel commented 6 years ago

Is it possible to get as output the assembled contig against which the realignment is done for each targeted region?

mozack commented 6 years ago

The raw assembled contigs will appear under the "--working" dir in all_contigs.fasta

mozack commented 6 years ago

For ABRA2 , assembled contigs can be output using the --contigs option. Contigs generate via methods other than assembly are not currently output.