mozack
commented
4 years ago We currently skip header lines starting with what I understand to be the standard bed header text. i.e. browser, track or #
Let me know if you are seeing otherwise.
Open V-Catherine opened 4 years ago
mozack
commented
4 years ago We currently skip header lines starting with what I understand to be the standard bed header text. i.e. browser, track or #
Let me know if you are seeing otherwise.
My bed file with its one-line header made abra2 crash with the following error: Loading target regions from : target.bed Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1 at abra.RegionLoader.load(RegionLoader.java:49) at abra.ReAligner.getRegions(ReAligner.java:1347) at abra.ReAligner.loadRegions(ReAligner.java:1379) at abra.ReAligner.reAlign(ReAligner.java:180) at abra.ReAligner.run(ReAligner.java:1833) at abra.Abra.main(Abra.java:12) Once I removed the header line, it run well. Many bed files have headers so maybe it would be useful to allow them. Thanks in advance