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mozack / abra2

ABRA2
MIT License
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Unknown format conversion exception #56

Open abhiku0007 opened 1 year ago

abhiku0007 commented 1 year ago

khanabadosh@KhanaBadosh:/mnt/c/Users/Abhishek Kumar/Desktop/NGS_Data_Analysis/Test1$ java -Xmx2g -jar abra2-2.23.jar --in Sorted_out.bam --out Sorted_out.abra.bam --ref S288C_reference_sequence_R64-2-1_20150113.fsa threads 4 --tmpdir tmpdir > abra.log INFO Sat Aug 26 18:25:56 IST 2023 Abra version: 2.23 Exception in thread "main" java.util.UnknownFormatConversionException: Conversion = 'K' at java.util.Formatter$FormatSpecifier.conversion(Formatter.java:2691) at java.util.Formatter$FormatSpecifier.(Formatter.java:2720) at java.util.Formatter.parse(Formatter.java:2560) at java.util.Formatter.format(Formatter.java:2501) at java.util.Formatter.format(Formatter.java:2455) at java.lang.String.format(String.java:2940) at abra.Logger.info(Logger.java:45) at abra.ReAligner.run(ReAligner.java:1739) at abra.Abra.main(Abra.java:12)

Kungfu-panda-69 commented 3 months ago

❯ java -Xmx6G -jar abra2-2.24.jar --in sortedsamatcc927d.bam --out sortedreasamatcc927d.abra.bam --ref mycoatcc927dna.fasta --threads 4 --tmpdir tmpdir > abra.log INFO Mon Sep 02 12:20:29 IST 2024 Abra version: 2.24 Exception in thread "main" java.util.UnknownFormatConversionException: Conversion = 'w' at java.base/java.util.Formatter$FormatSpecifier.conversion(Formatter.java:2839) at java.base/java.util.Formatter$FormatSpecifier.(Formatter.java:2865) at java.base/java.util.Formatter.parse(Formatter.java:2713) at java.base/java.util.Formatter.format(Formatter.java:2655) at java.base/java.util.Formatter.format(Formatter.java:2609) at java.base/java.lang.String.format(String.java:2897) at abra.Logger.info(Logger.java:45) at abra.ReAligner.run(ReAligner.java:1739) at abra.Abra.main(Abra.java:12)

even I got this type of error, how to solve it ?