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mpadge / srr-demo

Demo package for srr
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test issue #1

Open mpadge opened 3 years ago

mpadge commented 3 years ago

this is a test

ropensci-review-bot commented 3 years ago

Checks for riem (v0.1.1)

git hash: be941c7a

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL (>= 2)

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

click to see

The package has: - code in R (100% in 3 files) and - 1 authors - no vignette - no internal data file - 4 imported packages - 3 exported functions (median 19 lines of code) - 3 non-exported functions in R (median 32 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:--------------------|-----:|----------:|:----------| |files_R | 3| 16.8| | |files_src | 0| 0.0|TRUE | |files_vignettes | 2| 83.0| | |files_tests | 10| 88.6| | |loc_R | 97| 7.5| | |loc_vignettes | 50| 33.5| | |loc_tests | 5707| 97.6|TRUE | |num_vignettes | 0| 0.0|TRUE | |n_fns_r | 6| 2.2|TRUE | |n_fns_r_exported | 3| 10.4| | |n_fns_r_not_exported | 3| 1.1|TRUE | |n_fns_src | 0| 0.0|TRUE | |n_fns_per_file_r | 1| 0.0|TRUE | |num_params_per_fn | 1| 1.1|TRUE | |loc_per_fn_r | 26| 80.8| | |loc_per_fn_r_exp | 19| 46.3| | |loc_per_fn_r_not_exp | 32| 89.0| | |fn_call_network_size | 1| 0.3|TRUE | ---

1a. Network visualisation

Click here for interactive network visualisation of calls between objects in package.

2. goodpractice and other checks

click to see

### 3a. Continuous Integration Badges [![github](https://github.com/ropensci/riem/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/riem/actions) **GitHub Workflow Results** |name |conclusion |sha |date | |:-----------|:----------|:------|:----------| |Commands |success |f39e26 |2020-04-22 | |R-CMD-check |success |be941c |2021-04-20 | --- ### 3b. `goodpractice` results ### R CMD check R CMD check generated the following note: 1. checking package dependencies ... NOTE Packages suggested but not available for checking: 'forecast', 'xts'

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for demo (v0.0.0.9000)

git hash: 77dfe392

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL-3

1. srr

This package is in the following category:

:heavy_check_mark: All applicable standards have been documented in this package

Click here to view output of 'srr_report', which can be re-generated locally by running the `srr_report() function from within a local clone of the repository.

2. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (31% in 4 files) and C++ (69% in 2 files) - 1 authors - no vignette - no internal data file - 1 imported package - no exported function - 4 non-exported functions in R (median 3 lines of code) - 3 C++ functions (median 4 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:-----------------------|-----:|----------:|:----------| |files_R | 4| 23.3| | |files_src | 2| 77.4| | |files_vignettes | 0| 0.0|TRUE | |files_tests | 2| 64.1| | |loc_R | 10| 0.4|TRUE | |loc_src | 22| 0.3|TRUE | |loc_tests | 6| 4.2|TRUE | |blank_lines_R | 4| 2.9|TRUE | |blank_lines_src | 6| 76.5| | |blank_lines_tests | 1| 61.0| | |num_vignettes | 0| 0.0|TRUE | |n_fns_r | 4| 0.5|TRUE | |n_fns_r_exported | 0| 0.0|TRUE | |n_fns_r_not_exported | 4| 2.6|TRUE | |n_fns_src | 3| 77.0| | |n_fns_per_file_r | 1| 0.0|TRUE | |n_fns_per_file_src | 2| 6.7| | |num_params_per_fn | 0| 0.0|TRUE | |loc_per_fn_r | 3| 2.3|TRUE | |loc_per_fn_r_not_exp | 3| 4.0|TRUE | |loc_per_fn_src | 4| 1.8|TRUE | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 1| 0.3|TRUE | ---

2a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

3. goodpractice and other checks

Details of goodpractice and other checks (click to open)

--- ### 3b. `goodpractice` results ### R CMD check R CMD check generated the following check_fail: 1. description_bugreports ### Test Coverage Package: 0 The following files are not completely covered by tests: file | coverage --- | --- R/test.R | 0% src/cpptest.cpp | 0% ### lintr lintr found the following 101 potential issues: message | number of times --- | --- Lines should not be more than 80 characters. | 101

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.134 | |pkgcheck |0.0.1.326 | |srr |0.0.1.75 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for riem (v0.1.1)

git hash: be941c7a

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL (>= 2)

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 3 files) and - 1 authors - no vignette - no internal data file - 4 imported packages - 3 exported functions (median 19 lines of code) - 3 non-exported functions in R (median 32 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:-----------------------|-----:|----------:|:----------| |files_R | 3| 16.8| | |files_src | 0| 0.0|TRUE | |files_vignettes | 2| 83.0| | |files_tests | 10| 88.6| | |loc_R | 97| 7.5| | |loc_vignettes | 50| 33.5| | |loc_tests | 5707| 97.6|TRUE | |blank_lines_R | 24| 16.1| | |blank_lines_vignettes | 79| 83.6| | |blank_lines_tests | 7| 66.1| | |num_vignettes | 0| 0.0|TRUE | |n_fns_r | 6| 2.2|TRUE | |n_fns_r_exported | 3| 10.4| | |n_fns_r_not_exported | 3| 1.1|TRUE | |n_fns_src | 0| 0.0|TRUE | |n_fns_per_file_r | 1| 0.0|TRUE | |num_params_per_fn | 1| 1.1|TRUE | |loc_per_fn_r | 26| 80.8| | |loc_per_fn_r_exp | 19| 46.3| | |loc_per_fn_r_not_exp | 32| 89.0| | |doclines_per_fn_exp | 21| 15.5| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 1| 0.3|TRUE | ---

1a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

### 3a. Continuous Integration Badges [![github](https://github.com/ropensci/riem/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/riem/actions) **GitHub Workflow Results** |name |conclusion |sha |date | |:-----------|:----------|:------|:----------| |Commands |success |f39e26 |2020-04-22 | |R-CMD-check |success |be941c |2021-04-20 | --- ### 3b. `goodpractice` results ### lintr lintr found the following 12 potential issues: message | number of times --- | --- Lines should not be more than 80 characters. | 12

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.134 | |pkgcheck |0.0.1.326 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for taxize (v0.9.99.947)

git hash: a4db9a79

Important: All failing checks above must be addressed prior to proceeding

Package License: MIT + file LICENSE

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 136 files) and - 4 authors - 11 vignettes - 9 internal data files - 24 imported packages - 1382 exported functions (median 7 lines of code) - no non-exported function in R (median 6 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:------------------------|------:|----------:|:----------| |files_R | 136| 99.6| | |files_vignettes | 7| 98.2| | |files_tests | 294| 100.0| | |loc_R | 7963| 97.9|TRUE | |loc_vignettes | 543| 87.8| | |loc_tests | 79133| 99.9|TRUE | |num_vignettes | 11| 99.8|TRUE | |data_size_total | 196035| 87.3| | |data_size_median | 9046| 78.5| | |n_fns_r | 1382| 99.5|TRUE | |n_fns_r_exported | 1382| 100.0|TRUE | |n_fns_r_not_exported | 0| 0.0|TRUE | |n_fns_per_file_r | 3| 42.5| | |num_params_per_fn | 2| 10.7| | |loc_per_fn_r | 6| 17.7| | |loc_per_fn_r_exp | 7| 14.2| | |loc_per_fn_r_not_exp | 6| 23.5| | |rel_whitespace_R | 11| 94.4| | |rel_whitespace_vignettes | 37| 94.4| | |rel_whitespace_tests | 1| 98.6|TRUE | |doclines_per_fn_exp | 84| 86.0| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 1114| 98.1|TRUE | ---

1a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

### 3a. Continuous Integration Badges [![github](https://github.com/ropensci/taxize/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/taxize/actions) **GitHub Workflow Results** |name |conclusion |sha |date | |:-----------|:----------|:------|:----------| |examples |skipped |1cb3dc |2021-07-20 | |R-CMD-check |failure |1cb3dc |2021-07-20 | |revdep |success |1cb3dc |2021-07-20 | --- ### 3b. `goodpractice` results ### `R CMD check` with [rcmdcheck](https://r-lib.github.io/rcmdcheck/) rcmdcheck found no errors, warnings, or notes ### Test coverage with [covr](https://covr.r-lib.org/) Package coverage: 3.92 The following files are not completely covered by tests: file | coverage --- | --- R/aaa.R | 0% R/apg_lookup.R | 0% R/apg.R | 0% R/bold_downstream.R | 0% R/bold_search.R | 0% R/children.R | 0% R/class2tree.R | 0% R/classification.R | 0% R/col.R | 0% R/comm2sci.R | 0% R/downstream-utils.R | 0% R/downstream.R | 0% R/eol_dataobjects.R | 0% R/eol_hierarchy.R | 0% R/eol_invasive.R | 0% R/eol_pages.R | 0% R/eol_search.R | 0% R/eol_utiils.R | 0% R/eubon_capabilities.R | 0% R/eubon_children.R | 0% R/eubon_hierarchy.R | 0% R/eubon.R | 24.24% R/fungorum.R | 0% R/gbif_downstream.R | 0% R/gbif_helpers.R | 0% R/gbif_name_usage.R | 0% R/gbif_parse.R | 0% R/genbank2uid.R | 0% R/get_boldid.R | 0% R/get_eolid.R | 0% R/get_gbifid.R | 0% R/get_ids.R | 0% R/get_iucn.R | 0% R/get_natservid.R | 0% R/get_nbnid.R | 0% R/get_pow.R | 0% R/get_tolid.R | 54.97% R/get_tpsid.R | 0% R/get_tsn.R | 0% R/get_ubioid.R | 0% R/get_uid.R | 0% R/get_utils.R | 0% R/get_wiki.R | 0% R/get_wormsid.R | 0% R/getkey.R | 0% R/gisd_isinvasive.R | 0% R/gn_parse.R | 5% R/gni_details.R | 0% R/gni_helpers.R | 0% R/gni_parse.R | 0% R/gni_search.R | 0% R/gnr_datasources.R | 14.29% R/gnr_resolve.R | 0% R/http.R | 0% R/id2name.R | 0% R/ion.R | 0% R/iplant_resolve.R | 0% R/ipni_search.R | 2.94% R/itis_acceptname.R | 30.77% R/itis_downstream.R | 0% R/itis_getrecord.R | 0% R/itis_hierarchy.R | 0% R/itis_kingdomnames.R | 0% R/itis_lsid.R | 0% R/itis_name.R | 0% R/itis_native.R | 0% R/itis_refs.R | 0% R/itis_taxrank.R | 0% R/itis_terms.R | 0% R/iucn_getname.R | 0% R/iucn_id.R | 0% R/iucn_summary.R | 0% R/limited_print.R | 0% R/lowest_common.R | 0% R/nbn_classification.R | 0% R/nbn_search.R | 0% R/nbn_synonyms.R | 0% R/ncbi_children.R | 0% R/ncbi_downstream.R | 0% R/ncbi_get_taxon_summary.R | 0% R/ncbi_getbyid.R | 0% R/ncbi_getbyname.R | 0% R/ncbi_search.R | 0% R/onload.R | 0% R/phylomatic_format.R | 0% R/phylomatic_tree.R | 0% R/ping.R | 0% R/plantminer.R | 33.33% R/pow_search.R | 0% R/rankagg.R | 0% R/rename.R | 0% R/resolve.R | 0% R/sci2comm.R | 0% R/scrapenames.r | 0% R/status_codes.R | 0% R/synonyms.R | 0% R/tax_agg.R | 0% R/tax_name.R | 0% R/tax_rank.R | 0% R/taxize_capwords.r | 0% R/taxize_cite.R | 0% R/taxize_ldfast.R | 0% R/taxize_options.R | 50% R/taxon_state.R | 42.42% R/tnrs_sources.r | 0% R/tnrs.R | 0% R/tol_id2name.R | 0% R/tp_accnames.R | 0% R/tp_classification.R | 0% R/tp_dist.R | 0% R/tp_refs.R | 0% R/tp_search.R | 0% R/tp_summary.R | 0% R/tp_synonyms.R | 0% R/tpl_families.r | 0% R/tpl_get.r | 0% R/tpl_search.r | 0% R/ubio_classification_search.R | 0% R/ubio_classification.R | 0% R/ubio_id.R | 0% R/ubio_search.R | 0% R/ubio_synonyms.R | 0% R/upstream.R | 0% R/vascan_search.r | 0% R/worms_downstream.R | 0% R/zzz.R | 27.45% ### Cyclocomplexity with [cyclocomp](https://github.com/MangoTheCat/cyclocomp) The following functions have cyclocomplexity >= 15: function | cyclocomplexity --- | --- rank_indexing | 42 get_boldid | 40 get_gbifid | 33 get_natservid | 30 get_pow | 30 get_eolid | 29 get_tsn | 26 get_uid | 26 process_syn_ids | 26 get_tpsid | 25 get_wiki | 25 get_tolid | 24 get_wormsid | 22 get_nbnid | 20 gnr_resolve | 19 worms_worker | 19 getkey | 18 ncbi_children | 17 itis_downstream | 15 taxonomy_table_creator | 15 ### Static code analyses with [lintr](https://github.com/jimhester/lintr) [lintr](https://github.com/jimhester/lintr) found the following 425 potential issues: message | number of times --- | --- Avoid 1:length(...) expressions, use seq_len. | 3 Avoid 1:ncol(...) expressions, use seq_len. | 3 Avoid 1:nrow(...) expressions, use seq_len. | 13 Avoid changing the working directory, or restore it in on.exit | 5 Avoid library() and require() calls in packages | 2 Avoid NROW(...):1 expressions, use seq_len. | 1 Avoid using sapply, consider vapply instead, that's type safe | 57 Lines should not be more than 80 characters. | 321 Use <-, not =, for assignment. | 20

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.265 | |pkgcheck |0.0.1.367 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for slopes (v0.0.0.9000)

git hash: 4826f1d2

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL-3

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 5 files) and - 3 authors - 4 vignettes - 8 internal data files - 4 imported packages - 61 exported functions (median 7 lines of code) - no non-exported function in R (median 7 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:------------------------|------:|----------:|:----------| |files_R | 5| 29.8| | |files_vignettes | 5| 96.3| | |files_tests | 5| 78.5| | |loc_R | 291| 27.6| | |loc_vignettes | 425| 84.2| | |loc_tests | 100| 35.8| | |num_vignettes | 4| 96.0|TRUE | |data_size_total | 186510| 87.1| | |data_size_median | 7935| 77.6| | |n_fns_r | 61| 55.1| | |n_fns_r_exported | 61| 90.0| | |n_fns_r_not_exported | 0| 0.0|TRUE | |n_fns_per_file_r | 4| 53.1| | |num_params_per_fn | 2| 10.7| | |loc_per_fn_r | 7| 23.4| | |loc_per_fn_r_exp | 7| 14.2| | |loc_per_fn_r_not_exp | 7| 29.9| | |rel_whitespace_R | 6| 11.8| | |rel_whitespace_vignettes | 34| 91.3| | |rel_whitespace_tests | 15| 70.8| | |doclines_per_fn_exp | 32| 36.5| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 22| 41.8| | ---

1a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

### 3a. Continuous Integration Badges [![github](https://github.com/itsleeds/slopes/workflows/R-CMD-check/badge.svg)](https://github.com/itsleeds/slopes/actions) --- ### 3b. `goodpractice` results ### `R CMD check` with [rcmdcheck](https://r-lib.github.io/rcmdcheck/) rcmdcheck found no errors, warnings, or notes ### Test coverage with [covr](https://covr.r-lib.org/) Package coverage: 59.87 The following files are not completely covered by tests: file | coverage --- | --- R/plot_slope.R | 47.5% R/slope_get.R | 0% ### Cyclocomplexity with [cyclocomp](https://github.com/MangoTheCat/cyclocomp) No functions have cyclocomplexity >= 15 ### Static code analyses with [lintr](https://github.com/jimhester/lintr) [lintr](https://github.com/jimhester/lintr) found the following 141 potential issues: message | number of times --- | --- Lines should not be more than 80 characters. | 2 Use <-, not =, for assignment. | 139

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.265 | |pkgcheck |0.0.1.367 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for excluder (v0.2.2)

git hash: 1d8446c9

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL (>= 3)

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 35 files) and - 1 authors - 1 vignette - 3 internal data files - 8 imported packages - 54 exported functions (median 16 lines of code) - no non-exported function in R (median 20 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:------------------------|-----:|----------:|:----------| |files_R | 35| 91.1| | |files_vignettes | 1| 64.8| | |files_tests | 6| 81.5| | |loc_R | 607| 50.7| | |loc_vignettes | 118| 57.1| | |loc_tests | 252| 57.1| | |num_vignettes | 1| 60.7| | |data_size_total | 18483| 74.3| | |data_size_median | 6139| 75.9| | |n_fns_r | 54| 50.8| | |n_fns_r_exported | 54| 88.4| | |n_fns_r_not_exported | 0| 0.0|TRUE | |n_fns_per_file_r | 1| 0.0|TRUE | |num_params_per_fn | 4| 54.3| | |loc_per_fn_r | 18| 69.6| | |loc_per_fn_r_exp | 16| 39.6| | |loc_per_fn_r_not_exp | 20| 77.1| | |rel_whitespace_R | 19| 53.9| | |rel_whitespace_vignettes | 34| 75.0| | |rel_whitespace_tests | 15| 78.7| | |doclines_per_fn_exp | 48| 61.4| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 40| 57.0| | ---

1a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

### 3a. Continuous Integration Badges [![github](https://github.com/jeffreyrstevens/excluder/workflows/R-CMD-check/badge.svg)](https://github.com/jeffreyrstevens/excluder/actions) **GitHub Workflow Results** |name |conclusion |sha |date | |:-------------|:----------|:------|:----------| |pkgdown |success |1d8446 |2021-07-26 | |R-CMD-check |success |1d8446 |2021-07-26 | |test-coverage |success |1d8446 |2021-07-26 | --- ### 3b. `goodpractice` results ### `R CMD check` with [rcmdcheck](https://r-lib.github.io/rcmdcheck/) R CMD check generated the following note: 1. checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘qualtRics’, ‘rgeolocate’ ### Test coverage with [covr](https://covr.r-lib.org/) Package coverage: 81.79 ### Cyclocomplexity with [cyclocomp](https://github.com/MangoTheCat/cyclocomp) The following function have cyclocomplexity >= 15: function | cyclocomplexity --- | --- check_duplicates | 19 ### Static code analyses with [lintr](https://github.com/jimhester/lintr) [lintr](https://github.com/jimhester/lintr) found the following 201 potential issues: message | number of times --- | --- Lines should not be more than 80 characters. | 201

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.265 | |pkgcheck |0.0.1.367 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 3 years ago

Checks for [phruta (v0.1.0)]()

git hash: 6356b12b

Important: All failing checks above must be addressed prior to proceeding

Package License: MIT + file LICENSE

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 9 files) and - 1 authors - 2 vignettes - 1 internal data file - 10 imported packages - 40 exported functions (median 35 lines of code) - no non-exported function in R (median 5 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:------------------------|-----:|----------:|:----------| |files_R | 9| 51.3| | |files_vignettes | 3| 90.8| | |files_tests | 3| 71.1| | |loc_R | 311| 29.5| | |loc_vignettes | 115| 56.3| | |loc_tests | 172| 48.4| | |num_vignettes | 2| 87.5| | |data_size_total | 79882| 82.2| | |data_size_median | 79882| 90.5| | |n_fns_r | 40| 40.8| | |n_fns_r_exported | 40| 83.0| | |n_fns_r_not_exported | 0| 0.0|TRUE | |n_fns_per_file_r | 3| 38.6| | |num_params_per_fn | 4| 51.5| | |loc_per_fn_r | 8| 28.2| | |loc_per_fn_r_exp | 35| 70.3| | |loc_per_fn_r_not_exp | 5| 17.3| | |rel_whitespace_R | 16| 30.1| | |rel_whitespace_vignettes | 92| 87.4| | |rel_whitespace_tests | 31| 82.3| | |doclines_per_fn_exp | 40| 49.4| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 0| 0.0|TRUE | ---

1a. Network visualisation

Interactive network visualisation of calls between objects in package can be viewed by clicking here

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

--- ### 3b. `goodpractice` results ### `R CMD check` with [rcmdcheck](https://r-lib.github.io/rcmdcheck/) R CMD check generated the following check_fails: 1. description_url 2. description_bugreports 3. no_import_package_as_a_whole ### Test coverage with [covr](https://covr.r-lib.org/) Package coverage: 78.42 ### Cyclocomplexity with [cyclocomp](https://github.com/MangoTheCat/cyclocomp) No functions have cyclocomplexity >= 15 ### Static code analyses with [lintr](https://github.com/jimhester/lintr) [lintr](https://github.com/jimhester/lintr) found the following 89 potential issues: message | number of times --- | --- Avoid changing the working directory, or restore it in on.exit | 3 Lines should not be more than 80 characters. | 86

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.0.269 | |pkgcheck |0.0.1.373 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.

ropensci-review-bot commented 2 years ago

Checks for wmm (v1.1.1)

git hash: 0fe1132f

Important: All failing checks above must be addressed prior to proceeding

Package License: MIT + file LICENSE

1. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has: - code in R (100% in 6 files) and - 1 authors - no vignette - no internal data file - 1 imported package - 14 exported functions (median 15 lines of code) - 15 non-exported functions in R (median 22 lines of code) --- Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages The following terminology is used: - `loc` = "Lines of Code" - `fn` = "function" - `exp`/`not_exp` = exported / not exported All parameters are explained as tooltips in the locally-rendered HTML version of this report generated by [the `checks_to_markdown()` function](https://docs.ropensci.org/pkgcheck/reference/checks_to_markdown.html) The final measure (`fn_call_network_size`) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile. |measure | value| percentile|noteworthy | |:-----------------------|-----:|----------:|:----------| |files_R | 6| 40.3| | |files_vignettes | 0| 0.0|TRUE | |files_tests | 4| 79.0| | |loc_R | 345| 36.3| | |loc_tests | 186| 53.2| | |num_vignettes | 0| 0.0|TRUE | |n_fns_r | 29| 39.2| | |n_fns_r_exported | 14| 56.3| | |n_fns_r_not_exported | 15| 32.7| | |n_fns_per_file_r | 2| 43.8| | |num_params_per_fn | 2| 11.9| | |loc_per_fn_r | 17| 52.0| | |loc_per_fn_r_exp | 15| 35.6| | |loc_per_fn_r_not_exp | 22| 66.9| | |rel_whitespace_R | 21| 43.1| | |rel_whitespace_tests | 9| 31.9| | |doclines_per_fn_exp | 15| 6.0| | |doclines_per_fn_not_exp | 0| 0.0|TRUE | |fn_call_network_size | 11| 34.5| | ---

1a. Network visualisation

Click to see the interactive network visualisation of calls between objects in package

2. goodpractice and other checks

Details of goodpractice and other checks (click to open)

--- #### 3b. `goodpractice` results #### `R CMD check` with [rcmdcheck](https://r-lib.github.io/rcmdcheck/) rcmdcheck found no errors, warnings, or notes #### Test coverage with [covr](https://covr.r-lib.org/) Package coverage: 90.68 #### Cyclocomplexity with [cyclocomp](https://github.com/MangoTheCat/cyclocomp) No functions have cyclocomplexity >= 15 #### Static code analyses with [lintr](https://github.com/jimhester/lintr) [lintr](https://github.com/jimhester/lintr) found the following 39 potential issues: message | number of times --- | --- Lines should not be more than 80 characters. | 38 Use <-, not =, for assignment. | 1

Package Versions

|package |version | |:--------|:---------| |pkgstats |0.0.3.96 | |pkgcheck |0.0.2.276 |

Editor-in-Chief Instructions:

Processing may not proceed until the items marked with :heavy_multiplication_x: have been resolved.