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mpc-bioinformatics / McQuaC

Transform the Quality Control workflow from Knime into a workflow in Nextflow
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mzQC support #6

Open julianu opened 1 year ago

julianu commented 1 year ago

Having all the output in mzQC would be very good. The format is not yet v1.0.0, but pretty stable for the values which are currently processed by the pipeline.

Luxxii commented 1 year ago

For mzQC, we need a final format. If there is a final draft for, we can easily add another output here:

https://github.com/mpc-bioinformatics/Next-QC-Flow/blob/main/bin/unify_csv_tables.py

Here we concatenate all the results from all previous steps into a large (dynamic) csv file. We could use the data dictionary here to also export this into mzQC

julianu commented 3 months ago

As this is the same as #39, closing the latter. I will look into generation of an mzQC file, which has a final version my now.