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mpc-bioinformatics / McQuaC

Transform the Quality Control workflow from Knime into a workflow in Nextflow
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Max TIC is missing #66

Closed di-hardt closed 4 months ago

di-hardt commented 4 months ago

Highest TIC peak was shown in the old workflow

KarinSchork commented 4 months ago

isnt that Total_Ion_Current_Max,float,,The maximum of all TICs across MS1 and MS2 spectra ?

di-hardt commented 4 months ago

@SvitiMPC what was the column name in Knime?

SvitiMPC commented 4 months ago

Is is there, Karin is right. Somehow Christina have not seen it before in the summary table. Sorry

di-hardt commented 4 months ago

Perfect, done

SvitiMPC commented 4 months ago

But something is wrong. If I check Base Peak and the TIC they are the same. I think that was the problem

KarinSchork commented 4 months ago

yeah, we already saw that and will fix it! The basepeak is currently miscalculated