Question: is it possible to ignore the corrupted data?

mpc-bioinformatics / McQuaC

Transform the Quality Control workflow from Knime into a workflow in Nextflow

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Question: is it possible to ignore the corrupted data? #71

Closed SvitiMPC closed 2 months ago

SvitiMPC commented 4 months ago

If a file was corrupted (in a batch of raw data files selected for analysis), would it be possible to leave that one with an error and continue with the rest of the raws to be analysed? (Question from Kristin)

di-hardt commented 4 months ago

@julianu is looking into error handling

julianu commented 4 months ago

This is solved in 8ef7b07 There is an output of the processing state (error or success) for each file at the end.

SvitiMPC commented 3 months ago

Perfect! Thanks!

KarinSchork commented 2 months ago

done