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mpc-bioinformatics / McQuaC

Transform the Quality Control workflow from Knime into a workflow in Nextflow
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Too many proteins #9

Closed MaikeWeb closed 1 year ago

MaikeWeb commented 1 year ago

parse_protein_mzid is returning too many proteins. Should have the right tags filtered though.

Trying with mzTab is in progress, but has two header lines (one for proteins, one for PSMs) which are not grouped, needs further investigation.

julianu commented 1 year ago

PIA definitely had some errors (or: mistakenly named attributes and logics) in the CLI which are fixed in 1.4.8. I am sketching a little parser for the mzTab files right now...

julianu commented 1 year ago

should be fixed in PR #15