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mpc-bioinformatics
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McQuaC
Transform the Quality Control workflow from Knime into a workflow in Nextflow
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Order of columns in table0
#59
KarinSchork
opened
4 months ago
3
extract base peak information into table0
#58
KarinSchork
closed
4 months ago
1
Fixing Comet Parameters and Caluclationof Spike In Information
#57
Luxxii
closed
4 months ago
6
remove the fasta_datbases folder
#56
julianu
closed
3 months ago
0
comet params changes
#55
julianu
closed
4 months ago
1
Handling of spike in peptide results
#54
KarinSchork
closed
5 months ago
0
Workflow to combine multiple QC result files
#53
KarinSchork
closed
2 months ago
0
Rename Repo to McQuaC
#52
MaikeWeb
closed
1 month ago
1
fixed analysis_timestamp
#51
KarinSchork
closed
5 months ago
0
Spikein protein columns in quality-control.csv
#50
di-hardt
closed
4 months ago
2
fix error when procesing non ISA files
#49
di-hardt
closed
5 months ago
5
Documentation of how to setup this workflow in nf-cloud so that others can execute them on their own.
#48
Luxxii
closed
3 months ago
2
YYYY_MM_DD is not correctly reported in the qc table
#47
Luxxii
closed
5 months ago
0
Do we want to support multiple feature finder algorithms?
#46
Luxxii
opened
7 months ago
2
Initial Documentation of Parameters and update of the header extraction for Bruker files
#45
Luxxii
closed
5 months ago
1
file_and_analysis_timestamp bug
#44
KarinSchork
closed
5 months ago
0
Documentation pages
#43
Luxxii
opened
8 months ago
4
Folien zur Erklärung der Metriken
#42
Luxxii
opened
8 months ago
0
Visualisierung vom MCQuaC Workflow Ablauf (Metroplot)
#41
Luxxii
opened
8 months ago
1
Spalten Dokumentation (Tabelle)
#40
Luxxii
opened
8 months ago
1
Ausspucken einer mzQC
#39
Luxxii
closed
3 months ago
2
Special Issue JPR
#38
Luxxii
closed
2 months ago
1
InputParameter Beschreibungen
#37
Luxxii
closed
2 months ago
0
Modularization / Refactoring
#36
Luxxii
opened
8 months ago
2
Refactoring von Bruker Headern
#35
Luxxii
closed
2 months ago
0
Parameter Naming Errors / Paramter die gerade nichts tun
#34
Luxxii
closed
2 months ago
0
Tests einführen (Unittests / Vis Tests)
#33
Luxxii
opened
8 months ago
0
Video wie man es benutzt (über NF-Cloud)
#32
Luxxii
opened
8 months ago
0
Recherche von anderen QC Workflows (And Datasets)
#31
Luxxii
opened
8 months ago
1
DIA Metriken hinzufügen
#30
julianu
opened
8 months ago
3
Benchmarking gegen den Alten Workflow. Was ist jetzt gut? Was ist anders. Vergleichen mit alten Daten
#29
Luxxii
opened
8 months ago
1
Target/decoy-database
#28
di-hardt
opened
11 months ago
1
Mixed up variable naming vor MGF and mzML
#27
di-hardt
closed
4 months ago
1
creating of folder for thermo plots (fig15) doesn't work for me
#26
KarinSchork
closed
5 months ago
1
Report number of points per Peak (in MS1, maybe MS2, for DIA?)
#25
Luxxii
opened
12 months ago
1
Bug: Setting the main-output folder, does not do this for all the imported subprocesses
#24
Luxxii
closed
4 months ago
1
new feature: retention time stability
#23
KarinSchork
closed
4 months ago
1
Smiley indicator
#22
KarinSchork
opened
1 year ago
0
Ion mobility
#21
KarinSchork
opened
1 year ago
3
Quartile metrics also from other time-dependent numbers
#20
KarinSchork
opened
1 year ago
1
Option to reduce used cores and RAM
#19
KarinSchork
closed
3 months ago
2
Add PPM Plot
#18
KarinSchork
closed
2 months ago
4
Extending to DIA
#17
Luxxii
opened
1 year ago
3
FeatureFinderCentroided finds less features in Bruker-data
#16
Luxxii
closed
4 months ago
6
including PIA numbers
#15
julianu
closed
1 year ago
2
Error when creating Docker container
#14
di-hardt
closed
1 year ago
2
fix writing pickled-compressed-base64-encoded data
#13
di-hardt
closed
1 year ago
2
NaNs in feature columns
#12
KarinSchork
closed
1 year ago
2
Improvement: Number per processes per Search as well as ram limits for every step
#11
Luxxii
closed
1 year ago
1
Improve search for FDRscore in PSM reading
#10
MaikeWeb
closed
1 year ago
1
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