david: implement background gene list

mpg-age-bioinformatics / AGEpy

Bioinformatics tools for Python

http://agepy.readthedocs.io

MIT License

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david: implement background gene list #6

Closed setempler closed 7 years ago

setempler commented 8 years ago

supply a table with list of

requires

single file for all input tables to analyse or sequential along input tables (same amount of files)
--background-table FILE to specify file
--background-column N to specify column
--background-sheet SHEET to specify sheet

jorgeboucas commented 8 years ago

we don't need all this options, see DTC, thus there was a working script on the internal repo that if anything just needed to go on using the functions in the AGEpy package.

setempler commented 8 years ago

This option was already part of DTC, from which david is an extended copy of. You recently deleted the lines from the DTC function 'DAVIDit' which I planned to take the 'background feature' from.

DTC is not sufficient to deal with other input formats than gene lists per columns. E.g. a DEG table.