johnnyluu
commented
2 years ago @ficolo Do you have a list of all the values?
Closed ficolo closed 1 year ago
johnnyluu
commented
2 years ago @ficolo Do you have a list of all the values?
ficolo
commented
2 years ago | Physiological system | Icon CSS class |
|---|---|
| "mortality/aging": | "fas fa-skull-crossbones" |
| "embryo phenotype": | "impc-embryo" |
| "reproductive system phenotype": | "impc-sperm" |
| "growth/size/body region phenotype": | "fas fa-balance-scale-right" |
| "homeostasis/metabolism phenotype or adipose tissue phenotype": | "fas fa-bolt" |
| "behavior/neurological phenotype or nervous system phenotype": | "fas fa-brain" |
| "cardiovascular system phenotype": | "fas fa-heart" |
| "respiratory system phenotype": | "fas fa-lungs" |
| "digestive/alimentary phenotype or liver/biliary system phenotype": | "fas fa-stomach" |
| "renal/urinary system phenotype": | "fas fa-kidneys" |
| "limbs/digits/tail phenotype": | "fas fa-hand-paper" |
| "skeleton phenotype": | "fas fa-bone" |
| "immune system phenotype or hematopoietic system phenotype": | "fas fa-tint" |
| "muscle phenotype": | "fas fa-dumbbell" |
| "integument phenotype or pigmentation phenotype": | "fas fa-diagnoses" |
| "craniofacial phenotype": | "fas fa-meh" |
| "hearing/vestibular/ear phenotype": | "fas fa-ear" |
| "taste/olfaction phenotype": | "impc-nose" |
| "endocrine/exocrine gland phenotype": | "impc-trachea" |
| "vision/eye phenotype": | "fas fa-eye" |
The goal of this component is to inform the user what the status of the phenotyping process for a given gene, currently we only use it on the Gene Page, but we would like to re use it in other pages, like the Search page.
The grid is formed by a group of "Physiological system" which are set of top level terms in the Mammalian Phenotype Ontology.
The corresponding icon for a Physiological system should light up with a color when there is a significant hit or any of the Ontology terms that belong to said Physiological system, a different color if the phenotyping process has been performed and has return a not significant result and it should appear disabled if the gene hasn't been tested for any of the Physiological system phenotypes.
You can change the icons, most of them come from FontAwesome, but the embryo icon we made ourselves, after some discussions with our stakeholders, this actually depicts a mouse embryonic stage, so that one probably should stay similar to the current one, the icons have been always a difficult topics, considering they are abstractions of physiological systems, some of them not easily translatable to icons.