Literature curation: allele extraction from papers studying 100+ alleles

mpi2 / impc-publication-curation

IMPC publications curation app

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Literature curation: allele extraction from papers studying 100+ alleles #55

Closed viomunoz closed 2 years ago

viomunoz commented 2 years ago

Gene pages are going have a Publication section. This is in beta currently. UX meeting 13 October 2021: this section is to report papers studying IMPC alleles.

Requirement: We need to make sure that all alleles from papers studying 100+ alleles are included in our list with curated papers using IMPC data and products.

Steps:

[x] 1.-Make a list of the papers studying 100+ IMPC alleles.
[x] 2.-Extract all alleles.
[x] 3.-Ingest alleles.

viomunoz commented 2 years ago

Steps 1 and 2 completed.

Summary table:

The Pereira et al. paper only refers to 11 alleles, but they conducted secondary phenotyping. They were requested from the authors, so we may as well make sure they are reported in the curated list.

ficolo commented 2 years ago

This has been done, there are some small differences on the allele counts:

PMID	Reported on the issue	Loaded on the app
32245826	1342	1346
32553114	12	15
30973865	1312	1310
31844327	535	535
31371714	1688	1688