Issue:
I am trying to add an allele to a paper, but I have no options for that gene in the dropdown menu :
These are some of the cases, but there are more:
[1] Pde4c
[2] Osm
[3] Vsir
[4] Mtss2
[5] Spry
[6] Gpr180
[7] Lat & Mx2
[8] Ep400
[9] Magee2
[10] F2rl1
[11] Megf10
[12] Nphp4, Iqcb1, Cep290, Sdccag8, Anks6, Traf3ip1, Cc2d2a
When adding an allele to a paper, an autocomplete option is presented.
I am trying to add Pde4c<tm1.1(KOMP)Wtsi> but no options are presented for this gene Pde4c:
Requirements:
We need to be able to add these genes to these papers.
Details:
[1] Gene Pde4c
This is the paper:
Assessment of PDE4 Inhibitor-Induced Hypothermia as a Correlate of Nausea in Mice.
open_in_new PubMed ID: 34943270 open_in_new Full text
Boyd A, Aragon IV, Rich J, McDonough W, Oditt M, Irelan D, Fiedler E, Abou Saleh L, Richter W.
Biology - December, 2021
[2] Gene Osm
This is hte paper:
Heterocellular OSM-OSMR signalling reprograms fibroblasts to promote pancreatic cancer growth and metastasis.
open_in_new PubMed ID: 34921158 open_in_new Full text
Lee BY, Hogg EKJ, Below CR, Kononov A, Blanco-Gomez A, Heider F, Xu J, Hutton C, Zhang X, Scheidt T, Beattie K, Lamarca A, McNamara M, Valle JW, Jørgensen C.
Nature communications - December, 2021
[3] Gene Vsir:
The paper:
Kidney VISTA prevents IFN-γ/IL-9 axis-mediated tubulointerstitial fibrosis after acute glomerular injury.
open_in_new PubMed ID: 34752423 open_in_new Full text
Kim MG, Yun D, Kang CL, Hong M, Hwang J, Moon KC, Jeong CW, Kwak C, Kim DK, Oh KH, Joo KW, Kim YS, Lee DS, Han SS.
The Journal of clinical investigation - January, 2022
[4] Mtss2
Paper:
Revisiting I-BAR Proteins at Central Synapses.
open_in_new PubMed ID: 34975417 open_in_new Full text
Chatzi C, Westbrook GL.
Frontiers in neural circuits - December, 2021
Allele: Mtss2<tm1a(KOMP)Wtsi> https://www.mousephenotype.org/data/genes/MGI:3039591#order
[5] Spry4
Regulation of positive and negative selection and TCR signaling during thymic T cell development by capicua.
open_in_new PubMed ID: 34895467 open_in_new Full text
Kim S, Park GY, Park JS, Park J, Hong H, Lee Y.
eLife - December, 2021
Allele:
Spry4<tm1a(KOMP)Mbp>
https://www.mousephenotype.org/data/genes/MGI:1345144#order
[6] Gpr180
GPR180 is a component of TGFβ signalling that promotes thermogenic adipocyte function and mediates the metabolic effects of the adipocyte-secreted factor CTHRC1.
open_in_new PubMed ID: 34880217 open_in_new Full text open_in_new Cites IMPC Paper - PMID:21677750
Balazova L, Balaz M, Horvath C, Horváth Á, Moser C, Kovanicova Z, Ghosh A, Ghoshdastider U, Efthymiou V, Kiehlmann E, Sun W, Dong H, Ding L, Amri EZ, Nuutila P, Virtanen KA, Niemi T, Ukropcova B, Ukropec J, Pelczar P, Lamla T, Hamilton B, Neubauer H, Wolfrum C.
Nature communications - December, 2021
Allele:
Gpr180<tm1a(KOMP)Wtsi>
https://www.mousephenotype.org/data/genes/MGI:1930949#order
[7] Lat & Mx2
Paper:
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.
open_in_new PubMed ID: 34862403 open_in_new Full text open_in_new Cites IMPC Paper - PMID:22940749open_in_new Cites IMPC Paper - PMID:28650483open_in_new Cites IMPC Paper - PMID:29626206
Imbert A, Rompais M, Selloum M, Castelli F, Mouton-Barbosa E, Brandolini-Bunlon M, Chu-Van E, Joly C, Hirschler A, Roger P, Burger T, Leblanc S, Sorg T, Ouzia S, Vandenbrouck Y, Médigue C, Junot C, Ferro M, Pujos-Guillot E, de Peredo AG, Fenaille F, Carapito C, Herault Y, Thévenot EA.
Scientific data - December, 2021
Alleles:
Lat<em1(IMPC)Ics> https://www.mousephenotype.org/data/genes/MGI:1342293
Mx2<em1(IMPC)Ics> https://www.mousephenotype.org/data/genes/MGI:97244
[8] Ep400
Histone variant H2A.Z regulates zygotic genome activation.
open_in_new PubMed ID: 34853314 open_in_new Full text open_in_new Cites IMPC Paper - PMID:27626380
Ibarra-Morales D, Rauer M, Quarato P, Rabbani L, Zenk F, Schulte-Sasse M, Cardamone F, Gomez-Auli A, Cecere G, Iovino N.
Nature communications - December, 2021
Ep400<tm1b(EUCOMM)Hmgu>
https://www.mousephenotype.org/data/genes/MGI:1276124
[9] Magee2
A Positively Selected MAGEE2 LoF Allele Is Associated with Sexual Dimorphism in Human Brain Size and Shows Similar Phenotypes in Magee2 Null Mice.
open_in_new PubMed ID: 34464968 open_in_new Full text open_in_new Cites IMPC Paper - PMID:26147094open_in_new Cites IMPC Paper - PMID:28650954
Szpak M, Collins SC, Li Y, Liu X, Ayub Q, Fischer MC, Vancollie VE, Lelliott CJ, Xue Y, Yalcin B, Yang H, Tyler-Smith C.
Molecular biology and evolution - December, 2021
[10] F2rl1
Myeloid Protease-Activated Receptor-2 Contributes to Influenza A Virus Pathology in Mice.
open_in_new PubMed ID: 34925374 open_in_new Full text open_in_new Cites IMPC Paper - PMID:21677750
Gunther RC, Bharathi V, Miles SD, Tumey LR, Schmedes CM, Tatsumi K, Bridges MD, Martinez D, Montgomery SA, Beck MA, Camerer E, Mackman N, Antoniak S.
Frontiers in immunology - December, 2021
[11] Megf10
Stroke subtype-dependent synapse elimination by reactive gliosis in mice.
open_in_new PubMed ID: 34836962 open_in_new Full text
Shi X, Luo L, Wang J, Shen H, Li Y, Mamtilahun M, Liu C, Shi R, Lee JH, Tian H, Zhang Z, Wang Y, Chung WS, Tang Y, Yang GY.
Nature communications - November, 2021
Allele:
Megf10<tm1(KOMP)Vlcg>
https://www.mousephenotype.org/data/genes/MGI:2685177#order
[12]
Nephronophthisis-Pathobiology and Molecular Pathogenesis of a Rare Kidney Genetic Disease.
open_in_new PubMed ID: 34828368 open_in_new Full text
Gupta S, Ozimek-Kulik JE, Phillips JK.
Genes - November, 2021
Nphp4em1(IMPC)Bay;
Iqcb1em1(IMPC)Bay;
Cep290em1(IMPC)Mbp;
Sdccag8tm1a(EUCOMM)Wtsi;
Anks6tm1b(KOMP)Wtsi;
Traf3ip1em1(IMPC)Bay
Cc2d2atm1a(EUCOMM)Wtsi
Issue: I am trying to add an allele to a paper, but I have no options for that gene in the dropdown menu :
These are some of the cases, but there are more: [1] Pde4c [2] Osm [3] Vsir [4] Mtss2 [5] Spry [6] Gpr180 [7] Lat & Mx2 [8] Ep400 [9] Magee2 [10] F2rl1 [11] Megf10 [12] Nphp4, Iqcb1, Cep290, Sdccag8, Anks6, Traf3ip1, Cc2d2a
When adding an allele to a paper, an autocomplete option is presented.
I am trying to add Pde4c<tm1.1(KOMP)Wtsi> but no options are presented for this gene Pde4c:
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
Requirements: We need to be able to add these genes to these papers.
Details: [1] Gene Pde4c This is the paper: Assessment of PDE4 Inhibitor-Induced Hypothermia as a Correlate of Nausea in Mice. open_in_new PubMed ID: 34943270 open_in_new Full text Boyd A, Aragon IV, Rich J, McDonough W, Oditt M, Irelan D, Fiedler E, Abou Saleh L, Richter W. Biology - December, 2021
The allele I would like to add: Pde4c<tm1.1(KOMP)Wtsi> https://www.mousephenotype.org/data/genes/MGI:99556#order
[2] Gene Osm This is hte paper: Heterocellular OSM-OSMR signalling reprograms fibroblasts to promote pancreatic cancer growth and metastasis. open_in_new PubMed ID: 34921158 open_in_new Full text Lee BY, Hogg EKJ, Below CR, Kononov A, Blanco-Gomez A, Heider F, Xu J, Hutton C, Zhang X, Scheidt T, Beattie K, Lamarca A, McNamara M, Valle JW, Jørgensen C. Nature communications - December, 2021
The allele I am trying to add: Osm<tm1a(KOMP)Wtsi> https://www.mousephenotype.org/data/genes/MGI:104749
[3] Gene Vsir: The paper: Kidney VISTA prevents IFN-γ/IL-9 axis-mediated tubulointerstitial fibrosis after acute glomerular injury. open_in_new PubMed ID: 34752423 open_in_new Full text Kim MG, Yun D, Kang CL, Hong M, Hwang J, Moon KC, Jeong CW, Kwak C, Kim DK, Oh KH, Joo KW, Kim YS, Lee DS, Han SS. The Journal of clinical investigation - January, 2022
The allele to add: Vsir<tm1(KOMP)Vlcg> https://www.mousephenotype.org/data/genes/MGI:1921298#order
[4] Mtss2 Paper: Revisiting I-BAR Proteins at Central Synapses. open_in_new PubMed ID: 34975417 open_in_new Full text Chatzi C, Westbrook GL. Frontiers in neural circuits - December, 2021 Allele: Mtss2<tm1a(KOMP)Wtsi> https://www.mousephenotype.org/data/genes/MGI:3039591#order
[5] Spry4 Regulation of positive and negative selection and TCR signaling during thymic T cell development by capicua. open_in_new PubMed ID: 34895467 open_in_new Full text Kim S, Park GY, Park JS, Park J, Hong H, Lee Y. eLife - December, 2021 Allele: Spry4<tm1a(KOMP)Mbp> https://www.mousephenotype.org/data/genes/MGI:1345144#order
[6] Gpr180 GPR180 is a component of TGFβ signalling that promotes thermogenic adipocyte function and mediates the metabolic effects of the adipocyte-secreted factor CTHRC1. open_in_new PubMed ID: 34880217 open_in_new Full text open_in_new Cites IMPC Paper - PMID:21677750 Balazova L, Balaz M, Horvath C, Horváth Á, Moser C, Kovanicova Z, Ghosh A, Ghoshdastider U, Efthymiou V, Kiehlmann E, Sun W, Dong H, Ding L, Amri EZ, Nuutila P, Virtanen KA, Niemi T, Ukropcova B, Ukropec J, Pelczar P, Lamla T, Hamilton B, Neubauer H, Wolfrum C. Nature communications - December, 2021 Allele: Gpr180<tm1a(KOMP)Wtsi> https://www.mousephenotype.org/data/genes/MGI:1930949#order
[7] Lat & Mx2 Paper: ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis. open_in_new PubMed ID: 34862403 open_in_new Full text open_in_new Cites IMPC Paper - PMID:22940749open_in_new Cites IMPC Paper - PMID:28650483open_in_new Cites IMPC Paper - PMID:29626206 Imbert A, Rompais M, Selloum M, Castelli F, Mouton-Barbosa E, Brandolini-Bunlon M, Chu-Van E, Joly C, Hirschler A, Roger P, Burger T, Leblanc S, Sorg T, Ouzia S, Vandenbrouck Y, Médigue C, Junot C, Ferro M, Pujos-Guillot E, de Peredo AG, Fenaille F, Carapito C, Herault Y, Thévenot EA. Scientific data - December, 2021 Alleles: Lat<em1(IMPC)Ics> https://www.mousephenotype.org/data/genes/MGI:1342293 Mx2<em1(IMPC)Ics> https://www.mousephenotype.org/data/genes/MGI:97244
[8] Ep400 Histone variant H2A.Z regulates zygotic genome activation. open_in_new PubMed ID: 34853314 open_in_new Full text open_in_new Cites IMPC Paper - PMID:27626380 Ibarra-Morales D, Rauer M, Quarato P, Rabbani L, Zenk F, Schulte-Sasse M, Cardamone F, Gomez-Auli A, Cecere G, Iovino N. Nature communications - December, 2021 Ep400<tm1b(EUCOMM)Hmgu> https://www.mousephenotype.org/data/genes/MGI:1276124
[9] Magee2 A Positively Selected MAGEE2 LoF Allele Is Associated with Sexual Dimorphism in Human Brain Size and Shows Similar Phenotypes in Magee2 Null Mice. open_in_new PubMed ID: 34464968 open_in_new Full text open_in_new Cites IMPC Paper - PMID:26147094open_in_new Cites IMPC Paper - PMID:28650954 Szpak M, Collins SC, Li Y, Liu X, Ayub Q, Fischer MC, Vancollie VE, Lelliott CJ, Xue Y, Yalcin B, Yang H, Tyler-Smith C. Molecular biology and evolution - December, 2021
Allele: Magee2<em1(IMPC)Wtsi> https://www.mousephenotype.org/data/genes/MGI:2148316
[10] F2rl1 Myeloid Protease-Activated Receptor-2 Contributes to Influenza A Virus Pathology in Mice. open_in_new PubMed ID: 34925374 open_in_new Full text open_in_new Cites IMPC Paper - PMID:21677750 Gunther RC, Bharathi V, Miles SD, Tumey LR, Schmedes CM, Tatsumi K, Bridges MD, Martinez D, Montgomery SA, Beck MA, Camerer E, Mackman N, Antoniak S. Frontiers in immunology - December, 2021
Allele: F2rl1<tm1a(EUCOMM)Wtsi> https://www.mousephenotype.org/data/genes/MGI:101910#order
[11] Megf10 Stroke subtype-dependent synapse elimination by reactive gliosis in mice. open_in_new PubMed ID: 34836962 open_in_new Full text Shi X, Luo L, Wang J, Shen H, Li Y, Mamtilahun M, Liu C, Shi R, Lee JH, Tian H, Zhang Z, Wang Y, Chung WS, Tang Y, Yang GY. Nature communications - November, 2021 Allele: Megf10<tm1(KOMP)Vlcg> https://www.mousephenotype.org/data/genes/MGI:2685177#order
[12] Nephronophthisis-Pathobiology and Molecular Pathogenesis of a Rare Kidney Genetic Disease. open_in_new PubMed ID: 34828368 open_in_new Full text Gupta S, Ozimek-Kulik JE, Phillips JK. Genes - November, 2021 Nphp4em1(IMPC)Bay; Iqcb1em1(IMPC)Bay; Cep290em1(IMPC)Mbp; Sdccag8tm1a(EUCOMM)Wtsi; Anks6tm1b(KOMP)Wtsi; Traf3ip1em1(IMPC)Bay Cc2d2atm1a(EUCOMM)Wtsi