Issue:
P-value in phenotype list is different from page with data and stats XML
Open Link1
Scroll down to the list of the Phenotype associations
Click ‘System’ twice to order the list alphabetically descending
Note the p-value for the 1st hit (‘sclerocornea’): 1.98E-5
Click the bar chart icon on the right (link2)
Note the p-value shown is for the combined male and female analysis; 1.555275E-4
Click ‘More Statistics’
Click ‘Statistical result raw XML’
Search for ‘p_value’, second find
Note the value is 1.555275E-4
viomunoz
commented
4 years ago
Link1: http://www.mousephenotype.org/data/genes/MGI:894678 Link2: http://www.mousephenotype.org/data/charts?accession=MGI:894678&allele_accession_id=MGI:5529637&zygosity=heterozygote¶meter_stable_id=IMPC_EYE_080_001&pipeline_stable_id=JAX_001&phenotyping_center=JAX Link3: https://www.ebi.ac.uk/mi/impc/solr/statistical-result/select?q=*:*&rows=2147483647&sort=p_value+asc&fq=marker_accession_id:%22MGI:894678%22&fq=phenotyping_center:(%22JAX%22)&fq=allele_accession_id:%22MGI:5529637%22&fq=pipeline_stable_id:JAX_001&fq=parameter_stable_id:IMPC_EYE_080_001&fq=zygosity:heterozygote&fq=strain_accession_id:MGI\:3056279
Issue: P-value in phenotype list is different from page with data and stats XML Open Link1 Scroll down to the list of the Phenotype associations Click ‘System’ twice to order the list alphabetically descending Note the p-value for the 1st hit (‘sclerocornea’): 1.98E-5 Click the bar chart icon on the right (link2) Note the p-value shown is for the combined male and female analysis; 1.555275E-4 Click ‘More Statistics’ Click ‘Statistical result raw XML’ Search for ‘p_value’, second find Note the value is 1.555275E-4
Also found in DEV.mousephenotype.org
Reporter: Luis Santos