Open ggdurand2 opened 3 months ago
Hello,
When building MANA on CentOS Linux release 7.4.1708, gcc 9.1.0, and mpich 3.2, I get the following error message: if mpicc -v 2>&1 | grep -q 'MPICH version'; then \ rm -f tmp1.sh; \ mpicc -show -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group | \ sed -e 's^-lunwind ^ ^'> tmp1.sh; \ sh tmp1.sh; \ rm -f tmp1.sh; \ elif false; then \ make libnl3.a; \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2cat static_libs.txt-ldl -Wl,--end-group; \ else \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group; \ fi libproxy.a(sbrk.o): In functionsbrk': /mana/mpi-proxy-split/lower-half/sbrk.c:105: undefined reference to `brk' libproxy.a(munmap.o): In function munmap': /mana/mpi-proxy-split/lower-half/munmap.c:110: undefined reference tomunmap' collect2: error: ld returned 1 exit status libproxy.a(sbrk.o): In function `sbrk': /mana/mpi-proxy-split/lower-half/sbrk.c:105: undefined reference to __brk' libproxy.a(munmap.o): In functionmunmap': /mana/mpi-proxy-split/lower-half/munmap.c:110: undefined reference to __munmap' collect2: error: ld returned 1 exit status make[3]: *** [lh_proxy] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: *** [lh_proxy_da] Error 1 make[3]: Leaving directory/mana/mpi-proxy-split/lower-half' make[2]: [../bin/lh_proxy] Error 2 make[2]: Leaving directory `/mana/mpi-proxy-split' make[1]: [install] Error 2 make[1]: Leaving directory /mana/mpi-proxy-split' make: *** [mana] Error 2
if mpicc -v 2>&1 | grep -q 'MPICH version'; then \ rm -f tmp1.sh; \ mpicc -show -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group | \ sed -e 's^-lunwind ^ ^'> tmp1.sh; \ sh tmp1.sh; \ rm -f tmp1.sh; \ elif false; then \ make libnl3.a; \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2
-ldl -Wl,--end-group; \ else \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group; \ fi libproxy.a(sbrk.o): In function
munmap': /mana/mpi-proxy-split/lower-half/munmap.c:110: undefined reference to
__brk' libproxy.a(munmap.o): In function
__munmap' collect2: error: ld returned 1 exit status make[3]: *** [lh_proxy] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: *** [lh_proxy_da] Error 1 make[3]: Leaving directory
/mana/mpi-proxy-split' make: *** [mana] Error 2
Any help with this matter is much appreciated. Thank you for your time.
Best,
Georges Graduate student from the University of Illinois at Urbana Champaign
Hello,
When building MANA on CentOS Linux release 7.4.1708, gcc 9.1.0, and mpich 3.2, I get the following error message:
if mpicc -v 2>&1 | grep -q 'MPICH version'; then \ rm -f tmp1.sh; \ mpicc -show -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group | \ sed -e 's^-lunwind ^ ^'> tmp1.sh; \ sh tmp1.sh; \ rm -f tmp1.sh; \ elif false; then \ make libnl3.a; \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2cat static_libs.txt-ldl -Wl,--end-group; \ else \ mpicc -static -Wl,--wrap -Wl,__munmap -Wl,--wrap -Wl,shmat -Wl,--wrap -Wl,shmget -o lh_proxy_da -Wl,-start-group \ lh_proxy.o libproxy.a gethostbyname-static/gethostbyname_static.o -L$HOME/mpich-static/usr/lib64 -lmpi -L$HOME/local_install/lib -llzma -lz -lm -lxml2 -lrt -lpthread -lc -ldl -Wl,-end-group; \ fi libproxy.a(sbrk.o): In functionsbrk': /mana/mpi-proxy-split/lower-half/sbrk.c:105: undefined reference to `brk' libproxy.a(munmap.o): In functionmunmap': /mana/mpi-proxy-split/lower-half/munmap.c:110: undefined reference tomunmap' collect2: error: ld returned 1 exit status libproxy.a(sbrk.o): In function `sbrk': /mana/mpi-proxy-split/lower-half/sbrk.c:105: undefined reference to__brk' libproxy.a(munmap.o): In functionmunmap': /mana/mpi-proxy-split/lower-half/munmap.c:110: undefined reference to__munmap' collect2: error: ld returned 1 exit status make[3]: *** [lh_proxy] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: *** [lh_proxy_da] Error 1 make[3]: Leaving directory/mana/mpi-proxy-split/lower-half' make[2]: [../bin/lh_proxy] Error 2 make[2]: Leaving directory `/mana/mpi-proxy-split' make[1]: [install] Error 2 make[1]: Leaving directory/mana/mpi-proxy-split' make: *** [mana] Error 2Any help with this matter is much appreciated. Thank you for your time.
Best,
Georges Graduate student from the University of Illinois at Urbana Champaign