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mpievolbio-scicomp / cancer_sim

CancerSim: A python3 package for stochastic cancer simulation in 2D.
https://cancer-sim.readthedocs.io
MIT License
7 stars 4 forks source link

Missing pip install of casim package in Installation directions? #5

Closed blakeaw closed 4 years ago

blakeaw commented 4 years ago

I followed the steps to install casim using a conda env, but upon running the tests I got the following error:

Traceback (most recent call last): File "casim_test.py", line 4, in from casim import casim ModuleNotFoundError: No module named 'casim'

I think the Installation instructions may be missing an explicit step. I tried running pip install . from the cancer_sim directory and casim installed in my environment and then the tests ran OK.

jenzopr commented 4 years ago

You might also want to create a console script entrypoint in setup.py and then uploade to pip and/or create a conda package. Installation instructions and access to the high level function would simplify drastically.

blakeaw commented 4 years ago

This issue is part of the JOSS review at https://github.com/openjournals/joss-reviews/issues/2436

CFGrote commented 4 years ago

fixed by PR #13.

On 7/15/20 12:34 AM, Blake A. Wilson wrote:

I followed the steps to install using casim using a conda env, but upon running the tests if got the following error:

Traceback (most recent call last): File "casim_test.py", line 4, in from casim import casim ModuleNotFoundError: No module named 'casim'

I think the Installation instructions may be missing an explicit step. I tried running |pip install .| from the cancer_sim directory and casim installed in my environment and then the tests ran OK.

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blakeaw commented 4 years ago

Thanks!