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mptouzel / bayes_diffexpr

code associated with publication: Inferring the immune response from repertoire sequencingPuelma Touzel, M PLoS Comp Bio 2020
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Example input files #1

Open avilella opened 4 years ago

avilella commented 4 years ago

Hi, I would like to try this approach on some dog data (B-cells Bulk RNA-seq) before/after treatment. What would be an example pair of input files for this? Thanks.

mptouzel commented 4 years ago

Hi Albert, Thanks for the interest and for pointing out that having such files would increase usability. This week is pretty busy. I'll try for that this week, but might end up next week.

mptouzel commented 4 years ago

Hi again, Most of the data is actually already posted on the version of this method applied to Pogorelly et al. PNAS 2018: https://github.com/mptouzel/pogorelyy_et_al_2018/tree/master/Yellow_fever

I can add a this to the repo wiki. Does this work for you?