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mptouzel / bayes_diffexpr

code associated with publication: Inferring the immune response from repertoire sequencingPuelma Touzel, M PLoS Comp Bio 2020
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use bayes_diffexp #2

Open aurelBZH opened 4 years ago

aurelBZH commented 4 years ago

hi Thanks for the work on bayes_diffexp. we (in the i3lab sorbonne université) are very interested to try it but we struggle on few problem. We created a fork https://github.com/0m1n0/bayes_diffexpr and made few changes on variable name to use the save_table function but in the end no clone are selected . In fact the value cdflabel in the subset dataframe are only nan or 1.0 so no clone pass the pvalue. can you help us on that . thanks a lot
Aurélien Béliard bioinformatician i3lab

jgigla commented 3 years ago

I am having the same problem. Did you ever find a solution?

jgigla commented 3 years ago

In case anyone is unaware, it seems the replacement for this tool is https://github.com/statbiophys/NoisET, which I was able to use without problems.