Improve robustness in the case of network downtime

mptrsen / Orthograph

Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models

GNU General Public License v3.0

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Improve robustness in the case of network downtime #16

Closed mptrsen closed 10 years ago

mptrsen commented 11 years ago

When using a remote MySQL server which may be unreachable at some point in the analysis, there should be a retry-timeout mechanism so the whole analysis doesn't crash.

Also, the MySQL functions should be robust against slow queries that block entire tables.