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mptrsen / Orthograph

Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
GNU General Public License v3.0
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Permission/path for swipe? #26

Closed zjlahey closed 7 years ago

zjlahey commented 7 years ago

Running as sudo does not fix the issue. Thanks for you help - I'm looking forward to getting this program running!

$ ./orthograph-analyzer --test-deps Parsing config file '/Orthograph/orthograph.conf'. Using SQLite database file 'test_data/test_set.sqlite' Using SQLite database file 'test_data/output/Orussus_abietinus/Orussus_abietinus.sqlite' as species-specific database Fatal: SWIPE not executable at 'swipe'. Verify path and/or permissions.

mptrsen commented 7 years ago

The path to the 'swipe' executable needs to be specified as swipe-program if it is not installed in $PATH.

Once upon a time (Mon 2017-02-06 08:58), zjlahey said:

Running as sudo does not fix the issue. Thanks for you help - I'm looking forward to getting this program running!

$ ./orthograph-analyzer --test-deps Parsing config file '/Orthograph/orthograph.conf'. Using SQLite database file 'test_data/test_set.sqlite' Using SQLite database file 'test_data/output/Orussus_abietinus/Orussus_abietinus.sqlite' as species-specific database Fatal: SWIPE not executable at 'swipe'. Verify path and/or permissions.

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