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mptrsen / Orthograph

Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
GNU General Public License v3.0
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ForkManager eludes the test #27

Closed nylander closed 4 years ago

nylander commented 7 years ago

Hi Malte!

I'm trying out the orthograph package on a (Ubuntu 16.10) Linux system without Parallel::ForkManager, but it gives an error way passed the test for ForkManager's presence:

./orthograph-analyzer --test-deps && ./orthograph-analyzer
...some progress printing...
Can't locate object method "new" via package "Parallel::ForkManager" at ./orthograph-analyzer line 450.

I see you have a code at line 244 in orthograph-analyzer, so I was surprised to see my run start and proceed all the way to 450. No clue why at the moment, so just as a heads-up.

Cheers Johan

mptrsen commented 4 years ago

Thanks for the heads up. I added another test to catch this error earlier and give a more meaningful message.