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mptrsen / Orthograph

Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
GNU General Public License v3.0
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How to launch multiple Orthograph instances using the same database? #36

Closed linzhi2013 closed 4 years ago

linzhi2013 commented 4 years ago

Hi Malte,

Since loading the reference protein and CDS sequences into the database is very slow (for only one CDS file, it took me 2 hours to load it into an SQLite database, and I have 10 reference species), and I have multiple transcriptome samples, I'd like to know how can I run all the transcriptome samples simultaneously using the same prepared database, which means running multiple Orthograph at the same time.

Because I found, Orthograph only recognizes the orthograph.conf file within the program's own directory, and in this way, this orthograph.conf file can only be supplied with one sample input FASTA file.

Looking forward to your help:)

PS: Lars gave me the PC you once used, and I'm using it right now.

Cheers Guanliang

linzhi2013 commented 4 years ago

Found the manual in doc directory.