issues with bcftools version.

mquinodo / AutoMap

Tool to find regions of homozygosity (ROHs) from sequencing data.

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issues with bcftools version. #25

Open mxiong2 opened 3 months ago

mxiong2 commented 3 months ago

I get the following error, bcftools on my workstation is the latest version v1.9.1

root@CNV:/home/mai/automap/AutoMap# bash /home/mai/automap/AutoMap/AutoMap_v1.2.sh

--vcf /home/mai/automap/AutoMapTest/TestSample.vcf

--genome hg19

--out /home/mai/automap/AutoMap/test

ERROR: bcftools lower than v1.9 -> Please Update! Exit.

--vcf: command not found

--genome: command not found

--out: command not found

mquinodo commented 3 months ago

Did you try using bash command:

bash /home/mai/automap/AutoMap# bash /home/mai/automap/AutoMap/AutoMap_v1.2.sh --vcf /home/mai/automap/AutoMapTest/TestSample.vcf --genome hg19 --out /home/mai/automap/AutoMap/test