mquinodo / AutoMap

Tool to find regions of homozygosity (ROHs) from sequencing data.
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How small the minimum ROH size threshold can be without losing reliability? #27

Open ManavalanG opened 6 days ago

ManavalanG commented 6 days ago

The minimum ROH threshold (--minsize) that automap uses by default is 1 Mb. How low can I go in setting this threshold? Is 100kb or 50kb too small a threshold to use? Is there a threshold below which its accuracy falls significantly in your experience? Thanks!