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mrc-ide
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SIMPLEGEN
Simulating Plasmodium Epidemiological and Genetic Data
https://mrc-ide.github.io/SIMPLEGEN/
MIT License
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Bob/epi outputs
#42
bobverity
closed
3 years ago
0
Develop
#41
bobverity
closed
3 years ago
0
Bob/actions
#40
bobverity
closed
3 years ago
1
first commit
#39
bobverity
closed
3 years ago
1
Create CI.yml
#38
bobverity
closed
3 years ago
1
discrepancies with downloading from github vs using load_all()
#37
IzzyRou
closed
2 years ago
1
Migration matrix returns error
#36
IzzyRou
closed
2 years ago
2
Prevalence and incidence by age different for epi_outputs branch
#35
IzzyRou
closed
2 years ago
0
prune_transmission_record() returns an empty .txt file
#34
IzzyRou
closed
2 years ago
0
restructured how epi outputs are defined
#33
bobverity
closed
3 years ago
0
Fix merge conflicts with master
#32
bobverity
closed
3 years ago
0
Adding real data
#31
bobverity
closed
3 years ago
0
local branch for resolving merge conflics
#30
bobverity
closed
3 years ago
0
added decision tree to documentation
#29
bobverity
closed
3 years ago
0
genetic parameters function and changes to help
#28
bobverity
closed
3 years ago
0
added function for setting genetic params within project. Moved docum…
#27
bobverity
closed
3 years ago
0
Sanity checks
#26
IzzyRou
closed
3 years ago
0
more pipeline functions
#25
bobverity
closed
3 years ago
0
function for getting coalescent times from relatedness
#24
bobverity
closed
3 years ago
0
documentation improvements
#23
bobverity
closed
3 years ago
0
documentation improvements
#22
bobverity
closed
3 years ago
0
replacing some more plots in documentation
#21
bobverity
closed
3 years ago
0
Small changes to documentation - testing new method of inserting figures
#20
bobverity
closed
3 years ago
0
updated documentation, including trying to make figure plotting simpler
#19
bobverity
closed
3 years ago
0
Merging in small changes to documentation
#18
bobverity
closed
3 years ago
0
small changes to model description vignette
#17
bobverity
closed
3 years ago
0
added back in basic functions to prune transmission record and simula…
#16
bobverity
closed
3 years ago
0
Develop
#15
bobverity
closed
3 years ago
0
made sampling time in terms of integer days, rather than an arbitrary…
#14
bobverity
closed
3 years ago
0
Develop
#13
bobverity
closed
3 years ago
0
added back in crude method for writing pruned transmission record, an…
#12
bobverity
closed
3 years ago
0
Develop
#11
bobverity
closed
3 years ago
0
sampling now takes account of detectibility. Updated assertions. Upda…
#10
bobverity
closed
3 years ago
0
storing incidence daily and age distributions. Updated website text
#9
bobverity
closed
3 years ago
0
Merge fix
#8
bobverity
closed
3 years ago
0
Develop
#7
bobverity
closed
3 years ago
0
Develop
#6
bobverity
closed
3 years ago
0
Drop static vars
#5
bobverity
closed
3 years ago
0
fixed bug causing people to live past maximum age
#4
bobverity
closed
3 years ago
0
Merging Izzy recent changes (data etc.) back to develop
#3
bobverity
closed
3 years ago
0
Get develop up-to-speed with master
#2
bobverity
closed
3 years ago
0
Adding COI version 1.0
#1
IzzyRou
closed
3 years ago
0
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