mrc-ide / drjacoby

Flexible Markov chain monte carlo via reparameterization
https://mrc-ide.github.io/drjacoby/
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R6 class #119

Open pwinskill opened 1 year ago

pwinskill commented 1 year ago

Set the mcmc object as an R6 class with specific functions for: $initilaise() $tune() For tuning rungs (not needed for N = 1) $burnin() Burning in proposal SD $sample() Sampling

This will also allow us to save private aspects of the run state to act as a back end for any stop/start operations