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mrc-ide / drjacoby

Flexible Markov chain monte carlo via reparameterization
https://mrc-ide.github.io/drjacoby/
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Error message on installation of the package #123

Closed bernard-osei closed 1 day ago

bernard-osei commented 2 weeks ago

Hi there, please i am trying to install the drjacoby package, however, i am faced with the error message below: Error: Failed to install 'drjacoby' from GitHub: cannot open the connection In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir, restore_times) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir, restore_times) : skipping pax global extended headers

Please, i would appreciate any assistance given? Thank you.

bobverity commented 1 week ago

Hi Bernard,

Thanks for your message. It's a bit tricky to diagnose what exactly went wrong there, when I search I find that it may be caused by an interrupted connection or other issue unpacking the tarball.

The easiest solution may be to install via another method. We are currently working on getting drjacoby up on the runiverse, which would provide a simpler installation process. This should hopefully be up and running in the next few days, so I'll come back to you then. In the meantime, let me know if you make any further progress with installing the usual way.

bobverity commented 1 week ago

Hi Bernard, We have the R-universe installation method running now, so you could try this as an alternative:

install.packages('drjacoby', repos = 'https://mrc-ide.r-universe.dev')

bernard-osei commented 1 week ago

Alright, Thank you. I will try again to install. Bernard Osei PhD (Mathematics), ACoMVec/University of Cape Coast

MSc Mathematical Science Africa Institute for Mathematical Sciences, Ghana Summerhill Estates| East Legon Hills| Santoe| Accra P.O. Box LG DTD 20046, Legon, Accra | GPS: GK- 0647-1372 *Mobile: +23326396616*4/+233557079524 ORCID ID: https://orcid.org/0000-0002-2534-5051

On Wed, 26 Jun 2024 at 09:02, bobverity @.***> wrote:

Hi Bernard, We have the R-universe installation method running now, so you could try this as an alternative:

install.packages('drjacoby', repos = 'https://mrc-ide.r-universe.dev')

— Reply to this email directly, view it on GitHub https://github.com/mrc-ide/drjacoby/issues/123#issuecomment-2191067258, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQVQUGIBUYLROUAQYCMCQNLZJJYQJAVCNFSM6AAAAABJQKPFV6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOJRGA3DOMRVHA . You are receiving this because you authored the thread.Message ID: @.***>

bernard-osei commented 1 week ago

Hi, thank you; it worked now. Bernard Osei PhD (Mathematics), ACoMVec/University of Cape Coast

MSc Mathematical Science Africa Institute for Mathematical Sciences, Ghana Summerhill Estates| East Legon Hills| Santoe| Accra P.O. Box LG DTD 20046, Legon, Accra | GPS: GK- 0647-1372 *Mobile: +23326396616*4/+233557079524 ORCID ID: https://orcid.org/0000-0002-2534-5051

On Wed, 26 Jun 2024 at 09:02, bobverity @.***> wrote:

Hi Bernard, We have the R-universe installation method running now, so you could try this as an alternative:

install.packages('drjacoby', repos = 'https://mrc-ide.r-universe.dev')

— Reply to this email directly, view it on GitHub https://github.com/mrc-ide/drjacoby/issues/123#issuecomment-2191067258, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQVQUGIBUYLROUAQYCMCQNLZJJYQJAVCNFSM6AAAAABJQKPFV6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOJRGA3DOMRVHA . You are receiving this because you authored the thread.Message ID: @.***>

bobverity commented 1 week ago

Fantastic! Glad to know the R-universe method had made things easier 😊

Best wishes,

Bob Verity Lecturer in Genomic Epidemiology and Modelling Imperial College London

I work flexibly and may send emails outside normal working hours. I do not expect an immediate response

From: Bernard Osei @.> Date: Wednesday, 26 June 2024 at 09:29 To: mrc-ide/drjacoby @.> Cc: Verity, Robert J @.>, Comment @.> Subject: Re: [mrc-ide/drjacoby] Error message on installation of the package (Issue #123) Hi, thank you; it worked now. Bernard Osei PhD (Mathematics), ACoMVec/University of Cape Coast

MSc Mathematical Science Africa Institute for Mathematical Sciences, Ghana Summerhill Estates| East Legon Hills| Santoe| Accra P.O. Box LG DTD 20046, Legon, Accra | GPS: GK- 0647-1372 *Mobile: +23326396616*4/+233557079524 ORCID ID: https://orcid.org/0000-0002-2534-5051

On Wed, 26 Jun 2024 at 09:02, bobverity @.***> wrote:

Hi Bernard, We have the R-universe installation method running now, so you could try this as an alternative:

install.packages('drjacoby', repos = 'https://mrc-ide.r-universe.dev')

— Reply to this email directly, view it on GitHub https://github.com/mrc-ide/drjacoby/issues/123#issuecomment-2191067258, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQVQUGIBUYLROUAQYCMCQNLZJJYQJAVCNFSM6AAAAABJQKPFV6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOJRGA3DOMRVHA . You are receiving this because you authored the thread.Message ID: @.***>

— Reply to this email directly, view it on GitHubhttps://github.com/mrc-ide/drjacoby/issues/123#issuecomment-2191119963, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACGKEURTTSX6UJFSLVE2Q7LZJJ3YFAVCNFSM6AAAAABJQKPFV6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOJRGEYTSOJWGM. You are receiving this because you commented.Message ID: @.***>