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mrc-ide / epireview

https://mrc-ide.github.io/epireview/
GNU General Public License v3.0
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Add all required data to articles data frame from load_epidata #62

Closed cm401 closed 1 month ago

cm401 commented 2 months ago

If we load data for a pathogen and look at the articles data frame we only get a small subset of the article information

marburg_data <- epireview::load_epidata('marburg')

image

A call to marburg_articles <- epireview::load_epidata_raw( pathogen = "marburg", table = "article") is required to get full articles information. This is an issue for 'epiparameter::as_epidist()functionality and means that aload_epidata_raw` call is required + matching of articles.

We should expose at least the rows required by epiparameter in the articles dataframe in `load_epidata'. At a minimum "article_title", "doi" and "journal" are required.

fyi - @joshwlambert

sangeetabhatia03 commented 2 months ago

This has already been implemented in https://github.com/mrc-ide/epireview/pull/47 and will be available when that PR is merged.

sangeetabhatia03 commented 1 month ago

Closed via PR #47