mrc-ide / malariasimulation

The malaria model
https://mrc-ide.github.io/malariasimulation
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Plot functions for correlation #66

Open giovannic opened 3 years ago

giovannic commented 3 years ago

Correlations are hard to understand. We should provide outputs so that researchers can easily inspect the populations that are being drawn using the correlation parameters.

What would these outputs look like? Perhaps @pwinskill has a basic idea?

NOTE: it's been recommended to keep graphs out of our core R code. So we'll probably make a vignette to demonstrate how researchers can plot.

Initial convo and example

pwinskill commented 3 years ago

I think I was initially just thinking of something along the lines of the SI from the 2010 Griffin paper which has: image for between round and: image for between interventions. I am wondering whether an upset plot might be a nice way to update, something like: image Made with ggupset, showing the % of the population with none, or combinations of interventions?