Naomi report updates to-do

jeffeaton commented 4 years ago

Making notes here as reviewing report draft:

Small fixes:

[x] Swap order of UNAIDS and Naomi logos in header? What do you think?
[x] Change title 'District HIV estimates' to 'Subnational HIV estimates'
[x] Add commas if multiple survey IDs (paste(..., collapse = ", "))
[x] Convert calibration option labels to human readable. Can use the same labels as specified for the drop downs in Naomi web tool.
[x] Indicate whether ANC testing and ART data were included and which years if so.
[x] Remove line header anchors. (Default changed in recent update of knitr. There's an option to specify in the YAML header to revert to old behaviour)
[x] Adjust number formatting in table to be consistent with inst/metadata/metadata.csv specifications
- One decimal digit for prevalence, ART coverage, and incidence per 1000
- PLHIV and number on ART rounded to nearest 100
- Infections rounded to nearest 10
[x] Sort table by area_sort_order

Medium effort:

[x] Update date in header to reflect the reference data for estimates and date produced. E.g.: September 2018 (report 27 November 2020). I think that doing this will involve restructuring the report so most of the data inputs are done outside the report and passed as parameters, so it's a bit of effort.

jeffeaton commented 3 years ago

I'm adding some more issues on report review:

[x] Calibration sex/age strata only shown if calibration is applied (no need if 'None'
[x] New infections calibration level is missing
[x] Awareness of status calibration options are missing

[x] PLHIV and new infections counts should be age 15+ (rates should be 15-49 as in next figure)
[x] Number formatting in key legend

jeffeaton commented 3 years ago

@rtesra -- One more request on this:

This might make the differences between districts stand out m ore.

mrc-ide / naomi