SHIPP tool update incidence

mrc-ide / naomi

Naomi model for subnational HIV estimation

https://mrc-ide.github.io/naomi

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SHIPP tool update incidence #428

Closed rtesra closed 6 months ago

rtesra commented 7 months ago

Currently: Incidence rates are distributed between those with single cohabiting partner, those with non-regular partner(s), and KPs using a uniform IRR for non-regular vs cohabiting, and an IRR based on incidence/prevalence for KPs vs cohabiting.

Updated methods: reweighting the district-specific IRRs based on both KP size + incidence in the district to the national # new infections for KPs.

krisher1 commented 7 months ago

Initiated a PR to update branch pse-tool-update-incidence here: https://github.com/mrc-ide/naomi/pull/430

(Note: I don't have permission to make any changes on mrc-ide/naomi, hence all the PRs from my fork)

rtesra commented 6 months ago

Closed and pulled into: https://github.com/mrc-ide/naomi/pull/413