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mrc-ide / odin

ᚩ A DSL for describing and solving differential equations in R
https://mrc-ide.github.io/odin
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odin_prepare #180

Open eloycyst opened 4 years ago

eloycyst commented 4 years ago

Hello, I am using a package (EPICYST) that also use odin, but when I try to use EPICYST, it fails because there is not a function called odin_prepare. I contacted with the developers of the EPICYST package and they told me that this is an error of odin. I want to know if you know something about this error. thanks. install.packages("devtools") install.packages("usethis") library(usethis) library(devtools) find_rtools() devtools::install_github("mrc-ide/odin", upgrade = FALSE)

or

install.packages("odin") library(odin) devtools::install_github("pwinskill/EPICYST")

or

install.packages("EPICYST") library(EPICYST)

Initialise<-Set_up()

View parameters

Initialise[[1]][1:5]

View state variable starting values

Initialise[[2]][6:7] M1<-Run_model(Time=50) M2<-Run_model(Time=50, Burn_in=25) ??odin_prepare

odin::can_compile() can_compile(EPICYST)

odin::odin_package(".")

richfitz commented 4 years ago

Hi there - either use an old version of odin, or get @pwinskill to update that package to work with the current version of odin (Pete - you just need to regenerate the package code I think)