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mrc-ide / safir

squire and friends individual rewrite
https://mrc-ide.github.io/safir/
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variant fold reduction in NAT #58

Closed slwu89 closed 2 years ago

slwu89 commented 2 years ago

address #55

this reduces each individuals antibody titre value by 1 / VFR[timestep] before computation of:

  1. protection against infection
  2. protection against severe disease
  3. onward contribution to transmission
codecov[bot] commented 2 years ago

Codecov Report

Merging #58 (80f5a7a) into main (c5e4ce0) will increase coverage by 0.66%. The diff coverage is 95.52%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main      #58      +/-   ##
==========================================
+ Coverage   77.24%   77.90%   +0.66%     
==========================================
  Files          35       36       +1     
  Lines        2074     2150      +76     
==========================================
+ Hits         1602     1675      +73     
- Misses        472      475       +3
Impacted Files Coverage Δ
R/events_nat.R 0.00% <ø> (ø)
R/utils.R 88.23% <ø> (ø)
R/variables_nat.R 100.00% <ø> (ø)
R/efficacy_nat.R 89.18% <89.18%> (ø)
src/efficacy_nat.cpp 96.07% <90.47%> (ø)
R/events_exposure_vaccine.R 100.00% <100.00%> (ø)
R/parameters_nat.R 100.00% <100.00%> (ø)
R/parameters_vaccine.R 93.15% <100.00%> (+1.48%) :arrow_up:
R/process_infection_vaccine.R 100.00% <100.00%> (ø)
R/process_nat.R 100.00% <100.00%> (ø)
... and 1 more

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