mrc-ide / squire

SEIR transmission model of COVID-19. Documentation at:
https://mrc-ide.github.io/squire/
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Update to use odin 1.1.0 #154

Closed richfitz closed 3 years ago

richfitz commented 3 years ago

This PR updates squire to work with the next version of odin. I've changed how the class is built, which changes a couple of external things (notably here - the access to the IR has changed and initial() always requires a time, even when it is ignored). squire also uses a number of non-API odin things, which I have patched but retained the original spirit of adventure.

Depends on https://github.com/mrc-ide/odin/pull/207 and the branch pin in DESCRIPTION should be removed before merge