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mrc-ide / vivax

Individual-based model for P. vivax malaria transmission
MIT License
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Change prevelance summaries to calculate 2 - 10 #18

Closed giovannic closed 4 years ago

giovannic commented 4 years ago

Change the under 10 output to summarise individuals between 2 and 10

This closes the outputs issue

codecov[bot] commented 4 years ago

Codecov Report

Merging #18 into dev will increase coverage by 9.85%. The diff coverage is 90.40%.

Impacted file tree graph

@@            Coverage Diff            @@
##             dev      #18      +/-   ##
=========================================
+ Coverage   7.95%   17.81%   +9.85%     
=========================================
  Files          7        9       +2     
  Lines       2087     2201     +114     
=========================================
+ Hits         166      392     +226     
+ Misses      1921     1809     -112
Impacted Files Coverage Δ
R/run.R 88.67% <73.68%> (-8.55%) :arrow_down:
src/model.h 75.00% <75.00%> (ø)
src/model.cpp 3.44% <78.20%> (+3.44%) :arrow_up:
src/output.cpp 100.00% <100.00%> (ø)
src/test-output.cpp 100.00% <100.00%> (ø)

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pwinskill commented 4 years ago

Would be great if this could be parameterised so that we can have flexible output for multiple age groups. For example: clinicical incidence in 0-5s, 5-15s and 15+