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mrghg / agage-archive

Code for producing AGAGE archival files
MIT License
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Missing step in workflow? #15

Closed joe-pitt closed 10 months ago

joe-pitt commented 10 months ago

I'm trying to pull the public archive and plot stuff using the tutorial notebook. Am I being stupid, or is there an extra step required after running "dvc pull" in order for this to work? When I pull the archive it gets put at ~/agage-archive/data/agage/agage-public-archive.zip, but as yet there is nothing in my md_path and gcms_path:

agage: md_path: data-nc.zip gcms_path: data-gcms-nc.zip ale_path: ale_gage_sio1993/ale gage_path: ale_gage_sio1993/gage output_path: agage-public-archive.zip

This makes tutorial.ipynb fall over when running read_nc with: "FileNotFoundError: Folder or zip archive /user/home/zh21490/agage-archive/data/agage/data-nc.zip doesn't exist"

mrghg commented 10 months ago

Yeah, this isn't very clear... The Tutorial notebook is set up to look at the input data from GCWerks, which should be in your md_path and gcms_path. If you want to look at the processed outputs, use visualise.ipynb.

joe-pitt commented 10 months ago

Ah OK makes sense! I have another problem with that - but I will open a separate issue for it...